Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 COX6B1P5-201ENST00000509843 249 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 MIR5096-201ENST00000583713 70 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AP003400.3-201ENST00000624904 346 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 GNAS-202ENST00000306090 477 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC004074.1-201ENST00000421810 1063 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CYCSP11-201ENST00000436426 315 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC027667.1-201ENST00000545814 304 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL049779.3-201ENST00000557141 606 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC106730.2-201ENST00000566641 540 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC100757.1-201ENST00000616872 1835 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 LCMT1-AS2-202ENST00000565214 5666 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC109464.1-201ENST00000511091 819 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 UBA2-208ENST00000592791 910 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC020910.3-201ENST00000603701 874 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC009163.6-201ENST00000612367 342 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CCT8P1-201ENST00000413611 1657 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC234779.1-201ENST00000425910 285 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC012512.1-201ENST00000446594 718 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 THAP12P4-201ENST00000528321 2266 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RSU1P3-201ENST00000412878 835 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 KCTD10P1-201ENST00000434203 625 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 KNOP1P3-201ENST00000446933 426 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL672138.1-201ENST00000450604 1015 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RPL7AP28-201ENST00000464513 571 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RPS23P7-201ENST00000466210 444 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC023389.2-201ENST00000580031 955 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC068724.3-201ENST00000625906 87 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 LINC01109-201ENST00000603837 3081 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AL591135.1-201ENST00000401578 5914 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 GAPDHP15-201ENST00000398586 975 ntBASIC1.56□□□□□ -2.16
SYNE1Q8NF91 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC1.56□□□□□ -2.16
SYNE1Q8NF91 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms