Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AL450345.1-202ENST00000605741 3881 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 Y_RNA.62-201ENST00000362840 99 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 SNORA2.3-201ENST00000383920 135 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 BX323845.1-201ENST00000432417 179 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 RHOT1P3-201ENST00000436571 331 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 RPL34P20-201ENST00000442771 351 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 TCEA1P3-201ENST00000443005 880 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 NDUFA5P8-201ENST00000449019 346 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 OR6C72P-201ENST00000451403 892 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 OR52E3P-201ENST00000452083 936 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 RN7SL443P-201ENST00000464331 290 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 MTND3P6-201ENST00000485242 339 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 HMGN2P25-201ENST00000486956 268 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 COX6B1P2-201ENST00000489624 230 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 RPS26P24-201ENST00000497656 331 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 RN7SKP260-201ENST00000516907 149 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC090953.1-201ENST00000604305 1092 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 MIR7155-201ENST00000615925 56 ntBASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 HSPA8P18-201ENST00000439846 1928 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 RNA5SP305-201ENST00000362665 119 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 RN7SKP113-201ENST00000363891 295 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AL353625.1-202ENST00000366273 571 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC093162.1-201ENST00000419682 124 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 RPL12P43-201ENST00000420608 499 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 YY1P1-201ENST00000427625 668 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 PRPF38AP1-201ENST00000451976 933 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC138409.2-202ENST00000507274 458 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 RN7SKP147-201ENST00000517154 244 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 DPRXP4-201ENST00000578053 568 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 MIR3936-201ENST00000584304 110 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC093799.2-201ENST00000610062 578 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 Z95327.3-201ENST00000610385 572 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC108359.1-201ENST00000616451 1211 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AL391597.1-201ENST00000618707 694 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AP002799.1-201ENST00000623552 423 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 CASC19-221ENST00000641309 1382 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 CUL4AP1-201ENST00000514750 1863 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AC093849.1-201ENST00000563631 2209 ntBASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.72□□□□□ -1.65
C9orf40Q8IXQ3 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.71□□□□□ -1.65
C9orf40Q8IXQ3 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
C9orf40Q8IXQ3 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 AC097063.1-201ENST00000426714 1797 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 CASC19-281ENST00000642118 1554 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
C9orf40Q8IXQ3 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms