Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AL137141.1-201ENST00000624622 4836 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC007842.1-201ENST00000597336 2039 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 RAD1P1-201ENST00000231383 813 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 MTCYBP7-201ENST00000419540 1134 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC093162.1-201ENST00000419682 124 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ZNF736P11Y-201ENST00000442535 1213 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ZNF736P12Y-201ENST00000443152 1243 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 RPS26P41-201ENST00000450370 284 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ZNF736P4Y-201ENST00000454995 1243 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 EIF2S2P5-201ENST00000457635 968 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC092691.2-201ENST00000461787 803 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 NPM1P17-201ENST00000479221 602 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC109462.1-201ENST00000491087 368 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 SUMO1P1-201ENST00000497904 306 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC016550.1-201ENST00000505348 785 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC113192.3-201ENST00000529152 742 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC093510.2-201ENST00000562820 896 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 SNORD39.2-201ENST00000579995 76 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 RPL23AP61-201ENST00000623642 466 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 MIR7641-1-201ENST00000627518 61 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 PANDAR-201ENST00000629595 1506 ntBASIC5.42□□□□□ -1.54
COL28A1Q2UY09 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.42□□□□□ -1.54
COL28A1Q2UY09 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC140479.2-201ENST00000421567 3130 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 HSPD1P7-201ENST00000447985 1686 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RNU6-650P-201ENST00000365658 111 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RNA5SP187-201ENST00000384400 119 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL034403.1-201ENST00000399414 885 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RPL26P37-201ENST00000411983 438 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RPS4XP5-201ENST00000419038 768 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 ARL2BPP3-201ENST00000421226 480 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL360081.1-201ENST00000428299 555 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 RPL7P56-201ENST00000429441 717 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL663074.2-201ENST00000440621 479 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL158053.1-201ENST00000441503 453 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AL603882.1-201ENST00000463059 681 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC105233.1-201ENST00000498840 781 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 BRD9P1-201ENST00000529855 560 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.41□□□□□ -1.54
COL28A1Q2UY09 AC244502.2-201ENST00000543361 851 ntBASIC5.41□□□□□ -1.54
COL28A1Q2UY09 BNIP3P1-201ENST00000547295 580 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms