Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Z83838.1-202ENST00000456225 839 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC093899.1-201ENST00000457984 376 ntBASIC5.78□□□□□ -1.48
MSX2P35548 RN7SKP198-201ENST00000459286 306 ntBASIC5.78□□□□□ -1.48
MSX2P35548 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 AF305872.1-201ENST00000485217 471 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC018645.1-201ENST00000505003 109 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC093870.1-201ENST00000506837 213 ntBASIC5.78□□□□□ -1.48
MSX2P35548 OR5H4P-201ENST00000510851 923 ntBASIC5.78□□□□□ -1.48
MSX2P35548 snoU109.5-201ENST00000516231 132 ntBASIC5.78□□□□□ -1.48
MSX2P35548 RNU6-720P-201ENST00000516363 108 ntBASIC5.78□□□□□ -1.48
MSX2P35548 SCARNA11.1-201ENST00000516918 132 ntBASIC5.78□□□□□ -1.48
MSX2P35548 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
MSX2P35548 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 PCNPP1-201ENST00000552501 511 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX2P35548 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 VN1R83P-201ENST00000595685 445 ntBASIC5.78□□□□□ -1.48
MSX2P35548 RPS4XP21-201ENST00000603814 750 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC067959.1-201ENST00000604334 379 ntBASIC5.78□□□□□ -1.48
MSX2P35548 NDUFB9P1-201ENST00000604683 510 ntBASIC5.78□□□□□ -1.48
MSX2P35548 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 AL139286.2-201ENST00000606838 396 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AL513477.2-201ENST00000607858 568 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AP001596.2-201ENST00000608410 312 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 RN7SL261P-201ENST00000613441 282 ntBASIC5.78□□□□□ -1.48
MSX2P35548 AL158063.1-201ENST00000615349 536 ntBASIC5.78□□□□□ -1.48
MSX2P35548 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX2P35548 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX2P35548 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX2P35548 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX2P35548 NLRP3P1-201ENST00000622303 1785 ntBASIC5.78□□□□□ -1.48
MSX2P35548 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.48
MSX2P35548 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.77□□□□□ -1.48
MSX2P35548 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.77□□□□□ -1.48
MSX2P35548 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.77□□□□□ -1.49
MSX2P35548 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 AC018628.1-201ENST00000624147 3819 ntBASIC5.77□□□□□ -1.49
MSX2P35548 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
MSX2P35548 OR5M2P-202ENST00000641241 4242 ntBASIC5.77□□□□□ -1.49
MSX2P35548 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC5.77□□□□□ -1.49
MSX2P35548 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 RNA5SP453-201ENST00000362503 119 ntBASIC5.77□□□□□ -1.49
MSX2P35548 RNU1-84P-201ENST00000365447 164 ntBASIC5.77□□□□□ -1.49
MSX2P35548 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 RNU6-157P-201ENST00000383957 107 ntBASIC5.77□□□□□ -1.49
MSX2P35548 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 UBTFL2-201ENST00000411859 1191 ntBASIC5.77□□□□□ -1.49
MSX2P35548 PTP4A1P1-201ENST00000420539 515 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC004074.1-201ENST00000421810 1063 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 AL592114.2-201ENST00000440142 532 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 OR51B8P-201ENST00000449892 769 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AURKAPS1-201ENST00000451805 1212 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AKR1D1P1-201ENST00000457236 936 ntBASIC5.77□□□□□ -1.49
MSX2P35548 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX2P35548 AC090114.3-201ENST00000479267 829 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AL079303.1-201ENST00000486611 463 ntBASIC5.77□□□□□ -1.49
MSX2P35548 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 AC023050.1-201ENST00000498198 304 ntBASIC5.77□□□□□ -1.49
MSX2P35548 PSMA2P2-201ENST00000504319 686 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC010424.1-201ENST00000506336 297 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC093664.1-201ENST00000511779 289 ntBASIC5.77□□□□□ -1.49
MSX2P35548 RN7SKP288-201ENST00000516227 268 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 C1GALT1P3-201ENST00000522049 819 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 AC023968.1-201ENST00000560719 475 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX2P35548 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 MIR3915-201ENST00000578518 97 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 OR7E19P-202ENST00000589942 844 ntBASIC5.77□□□□□ -1.49
MSX2P35548 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX2P35548 AL591167.1-201ENST00000607321 456 ntBASIC5.77□□□□□ -1.49
MSX2P35548 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 371.8 ms