Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC093655.2-201ENST00000425735 631 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AL445528.1-201ENST00000426330 420 ntBASIC5.26□□□□□ -1.57
MSH3P20585 RPL17P35-201ENST00000432217 549 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AL392003.1-201ENST00000434394 243 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 AC104634.1-201ENST00000452720 462 ntBASIC5.26□□□□□ -1.57
MSH3P20585 MTND2P39-201ENST00000457230 764 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AC011225.1-201ENST00000457751 369 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AC079168.1-201ENST00000458741 345 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AC016687.1-201ENST00000482574 353 ntBASIC5.26□□□□□ -1.57
MSH3P20585 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 RPS12P31-201ENST00000491419 398 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 AC117525.1-201ENST00000515228 503 ntBASIC5.26□□□□□ -1.57
MSH3P20585 SNORA26.10-201ENST00000516427 141 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH3P20585 AC004825.1-201ENST00000555068 586 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSH3P20585 MIR4489-201ENST00000578869 62 ntBASIC5.26□□□□□ -1.57
MSH3P20585 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.26□□□□□ -1.57
MSH3P20585 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 CYP4F35P-202ENST00000636121 390 ntBASIC5.26□□□□□ -1.57
MSH3P20585 Z95331.1-201ENST00000623075 23112 ntBASIC5.26□□□□□ -1.57
MSH3P20585 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.26□□□□□ -1.57
MSH3P20585 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
MSH3P20585 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
MSH3P20585 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
MSH3P20585 SCARNA15-201ENST00000607520 4325 ntBASIC5.26□□□□□ -1.57
MSH3P20585 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.25□□□□□ -1.57
MSH3P20585 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.25□□□□□ -1.57
MSH3P20585 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.25□□□□□ -1.57
MSH3P20585 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.25□□□□□ -1.57
MSH3P20585 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 AL606490.8-201ENST00000441624 319 ntBASIC5.25□□□□□ -1.57
MSH3P20585 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.25□□□□□ -1.57
MSH3P20585 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 AL035090.1-201ENST00000454835 332 ntBASIC5.25□□□□□ -1.57
MSH3P20585 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.25□□□□□ -1.57
MSH3P20585 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 IMPA1P1-201ENST00000510718 842 ntBASIC5.25□□□□□ -1.57
MSH3P20585 FTH1P11-201ENST00000517577 551 ntBASIC5.25□□□□□ -1.57
MSH3P20585 AC019227.1-201ENST00000526902 510 ntBASIC5.25□□□□□ -1.57
MSH3P20585 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 MTCYBP13-201ENST00000578634 1093 ntBASIC5.25□□□□□ -1.57
MSH3P20585 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.25□□□□□ -1.57
MSH3P20585 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.25□□□□□ -1.57
MSH3P20585 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.25□□□□□ -1.57
MSH3P20585 AL512329.2-201ENST00000607350 548 ntBASIC5.25□□□□□ -1.57
MSH3P20585 AC016542.1-201ENST00000608259 493 ntBASIC5.25□□□□□ -1.57
MSH3P20585 MIR6886-201ENST00000619864 61 ntBASIC5.25□□□□□ -1.57
MSH3P20585 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.25□□□□□ -1.57
MSH3P20585 AC091932.2-201ENST00000623014 291 ntBASIC5.25□□□□□ -1.57
MSH3P20585 AL356490.1-201ENST00000623079 479 ntBASIC5.25□□□□□ -1.57
MSH3P20585 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.25□□□□□ -1.57
MSH3P20585 FRG1EP-201ENST00000634469 770 ntBASIC5.25□□□□□ -1.57
MSH3P20585 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
MSH3P20585 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.25□□□□□ -1.57
MSH3P20585 AL022322.2-201ENST00000624072 20397 ntBASIC5.25□□□□□ -1.57
MSH3P20585 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
MSH3P20585 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
MSH3P20585 NAMPTP1-201ENST00000440465 2514 ntBASIC5.25□□□□□ -1.57
MSH3P20585 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 AC104623.2-202ENST00000623477 4002 ntBASIC5.25□□□□□ -1.57
MSH3P20585 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
MSH3P20585 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
MSH3P20585 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.24□□□□□ -1.57
MSH3P20585 RNA5SP183-201ENST00000362452 119 ntBASIC5.24□□□□□ -1.57
MSH3P20585 RCC2P2-201ENST00000422174 918 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AC108075.1-201ENST00000424692 529 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AC124944.2-201ENST00000429866 1242 ntBASIC5.24□□□□□ -1.57
MSH3P20585 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.24□□□□□ -1.57
MSH3P20585 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.24□□□□□ -1.57
MSH3P20585 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.24□□□□□ -1.57
MSH3P20585 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms