Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 RPL37P18-201ENST00000411602 243 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 MTND4P11-201ENST00000417020 1058 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.55□□□□□ -1.36
COL3A1P02461 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC6.55□□□□□ -1.36
COL3A1P02461 MTND6P32-201ENST00000457611 483 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 RN7SL319P-201ENST00000480656 221 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 AC093534.1-201ENST00000504977 132 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.55□□□□□ -1.36
COL3A1P02461 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC6.55□□□□□ -1.36
COL3A1P02461 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC6.55□□□□□ -1.36
COL3A1P02461 PCNPP1-201ENST00000552501 511 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC6.55□□□□□ -1.36
COL3A1P02461 AL049839.1-201ENST00000556151 657 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.55□□□□□ -1.36
COL3A1P02461 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC6.55□□□□□ -1.36
COL3A1P02461 AP003117.1-201ENST00000602771 554 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 AC005084.1-201ENST00000605160 304 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 AC016597.2-201ENST00000613256 341 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 AC100827.5-201ENST00000615883 426 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.55□□□□□ -1.36
COL3A1P02461 OR6C71P-202ENST00000641886 1107 ntBASIC6.55□□□□□ -1.36
COL3A1P02461 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.55□□□□□ -1.36
COL3A1P02461 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
COL3A1P02461 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.55□□□□□ -1.36
COL3A1P02461 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL3A1P02461 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
COL3A1P02461 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.54□□□□□ -1.36
COL3A1P02461 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL3A1P02461 SNORA5.1-201ENST00000384275 131 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 CYB5AP4-201ENST00000396692 399 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AL021331.1-201ENST00000402817 582 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.54□□□□□ -1.36
COL3A1P02461 AC009506.2-201ENST00000420635 840 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 SLC25A18P1-201ENST00000449385 454 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 COL6A4P2-205ENST00000509855 506 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 RNU6-415P-201ENST00000516252 97 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.54□□□□□ -1.36
COL3A1P02461 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.54□□□□□ -1.36
COL3A1P02461 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.54□□□□□ -1.36
COL3A1P02461 TVP23CP2-201ENST00000571473 623 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 RN7SL802P-201ENST00000577858 299 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL3A1P02461 MIR4660-201ENST00000583549 74 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC6.54□□□□□ -1.36
COL3A1P02461 AC010424.2-201ENST00000607594 443 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 MIR6820-201ENST00000611508 62 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AC016542.2-201ENST00000624201 619 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 AC073342.3-201ENST00000624211 193 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL3A1P02461 AC099654.2-201ENST00000433031 1980 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.54□□□□□ -1.36
COL3A1P02461 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL3A1P02461 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL3A1P02461 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC6.54□□□□□ -1.36
COL3A1P02461 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.54□□□□□ -1.36
COL3A1P02461 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.54□□□□□ -1.36
COL3A1P02461 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.54□□□□□ -1.36
COL3A1P02461 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL3A1P02461 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC6.53□□□□□ -1.36
COL3A1P02461 OR2B7P-201ENST00000429302 934 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.53□□□□□ -1.36
COL3A1P02461 AL513533.1-201ENST00000453728 415 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AL356981.1-201ENST00000454879 684 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC082651.2-201ENST00000496833 166 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC6.53□□□□□ -1.36
COL3A1P02461 ENPP7P9-201ENST00000514456 627 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC026407.1-201ENST00000518369 204 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC6.53□□□□□ -1.36
COL3A1P02461 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.53□□□□□ -1.36
COL3A1P02461 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 AL512782.1-201ENST00000603093 364 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 uc_338.18-201ENST00000615451 175 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC022079.1-201ENST00000621546 602 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AC019206.1-201ENST00000621938 425 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AP000770.2-201ENST00000623694 100 ntBASIC6.53□□□□□ -1.36
COL3A1P02461 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC6.53□□□□□ -1.36
COL3A1P02461 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
COL3A1P02461 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL3A1P02461 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms