Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC011755.1-201ENST00000623763 2049 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 CASC19-204ENST00000641001 2055 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AP004607.3-201ENST00000530354 3915 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC083843.3-201ENST00000623679 2186 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VMP1Q96GC9 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VMP1Q96GC9 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VMP1Q96GC9 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 RNA5SP178-201ENST00000410380 128 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AL357752.1-201ENST00000412817 349 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC093155.2-201ENST00000420734 937 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 HMGB3P24-201ENST00000433260 622 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AL357520.1-201ENST00000441557 453 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 HMGN1P36-201ENST00000446623 298 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 OR7E116P-201ENST00000448529 957 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC104109.1-201ENST00000498563 436 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC105384.2-201ENST00000508433 640 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 IGLVIV-64-201ENST00000518581 301 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 IGKV3D-34-201ENST00000522638 302 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 IGLV3-30-201ENST00000524362 298 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC023158.1-201ENST00000561632 1025 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC010547.6-201ENST00000571789 193 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC016957.2-201ENST00000616998 848 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC079298.2-201ENST00000623885 459 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC104820.1-201ENST00000624183 307 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC008691.1-209ENST00000642094 814 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VMP1Q96GC9 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VMP1Q96GC9 AC017002.4-201ENST00000604721 1525 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VMP1Q96GC9 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 Z95327.2-201ENST00000414579 1873 ntBASIC5.37□□□□□ -1.55
VMP1Q96GC9 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
VMP1Q96GC9 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 MIR92A2-201ENST00000385299 75 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 HMGB1P20-201ENST00000402555 677 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 RN7SKP286-201ENST00000410894 299 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC064862.4-201ENST00000442180 334 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 RPL36AP39-201ENST00000445859 318 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 LRRC37A14P-201ENST00000452297 462 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC005229.2-201ENST00000456995 399 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC004129.2-201ENST00000457229 287 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 RN7SL570P-201ENST00000484405 292 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC109481.1-201ENST00000509173 282 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC012557.1-201ENST00000607115 611 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC011472.4-201ENST00000615848 491 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC126175.1-201ENST00000617041 758 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 AC007342.8-201ENST00000623278 678 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 BMS1P21-201ENST00000634565 365 ntBASIC5.36□□□□□ -1.55
VMP1Q96GC9 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.36□□□□□ -1.55
VMP1Q96GC9 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VMP1Q96GC9 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms