Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
CHMP4CQ96CF2 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
CHMP4CQ96CF2 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.74□□□□□ -1.33
CHMP4CQ96CF2 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CHMP4CQ96CF2 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 U3.25-201ENST00000391209 220 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RPS6P23-201ENST00000413224 722 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RPL35AP24-201ENST00000413846 330 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 BX664727.1-201ENST00000416024 466 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RPA2P2-201ENST00000419698 796 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 BX276092.6-201ENST00000430476 250 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 TMEM183AP1-205ENST00000432739 290 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC011242.1-201ENST00000433596 1158 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC138761.5-201ENST00000433967 325 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 FMO7P-201ENST00000436045 768 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 BX276092.8-201ENST00000455722 250 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RPS17P15-201ENST00000475609 349 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC022215.1-201ENST00000481770 362 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 DUTP1-201ENST00000493631 470 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC245884.10-201ENST00000597355 337 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AC008115.3-201ENST00000614874 549 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 AL390318.1-201ENST00000624564 687 ntBASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
CHMP4CQ96CF2 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 OR4F13P-202ENST00000560066 2054 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 MTND5P11-201ENST00000511037 1812 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 RNU6-1257P-201ENST00000384625 110 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 METTL5-204ENST00000409340 472 ntTSL 5 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC096921.1-201ENST00000411661 375 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 OR2AT2P-201ENST00000413438 905 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC012075.1-201ENST00000436549 580 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC074386.1-201ENST00000476560 767 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC074087.1-201ENST00000512059 724 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 MRPS16P1-201ENST00000523462 412 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 YWHAZP1-201ENST00000556286 722 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AGGF1P7-201ENST00000562369 913 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC010547.6-201ENST00000571789 193 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 FO393422.1-201ENST00000603908 708 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC099654.9-201ENST00000637055 678 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 GVINP1-202ENST00000531871 7271 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC008079.2-201ENST00000623543 20396 ntBASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CHMP4CQ96CF2 AC138907.8-201ENST00000623981 2256 ntBASIC6.71□□□□□ -1.33
CHMP4CQ96CF2 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms