Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 HYALP1-201ENST00000417674 1279 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 DDX39BP1-205ENST00000422507 192 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 HSPE1P16-201ENST00000426640 348 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AC009238.2-201ENST00000431026 355 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 PTMAP6-201ENST00000439110 327 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AC109462.1-201ENST00000491087 368 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AC044860.2-201ENST00000561005 179 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 SMG1P7-201ENST00000565246 2704 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AL121839.2-201ENST00000565058 6943 ntBASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
C9orf40Q8IXQ3 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 RPS20P25-201ENST00000412447 352 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC046176.1-201ENST00000435260 1170 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 KNOP1P3-201ENST00000446933 426 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC073850.1-201ENST00000449243 255 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC104849.1-201ENST00000462623 405 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 RPL7AP6-201ENST00000477943 801 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 OR52A4P-203ENST00000498233 1014 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC147055.3-201ENST00000510547 851 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC004980.4-201ENST00000513375 203 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 RN7SKP66-201ENST00000516681 231 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC013701.1-201ENST00000522657 465 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC011270.1-201ENST00000558606 583 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC051619.2-201ENST00000559063 397 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 PRPF19P1-201ENST00000584766 898 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC087763.1-201ENST00000603391 286 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC211433.2-201ENST00000608433 387 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AL627230.1-201ENST00000613077 211 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AL591926.8-201ENST00000616876 211 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 AC091932.2-201ENST00000623014 291 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 NXF4-202ENST00000416098 1465 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 THAP12P4-201ENST00000528321 2266 ntBASIC4.74□□□□□ -1.65
C9orf40Q8IXQ3 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
C9orf40Q8IXQ3 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms