Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 ZNF971P-201ENST00000562068 1249 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC011445.2-201ENST00000599274 173 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 RPL12P48-201ENST00000605620 304 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 AC104985.3-201ENST00000623479 597 ntBASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.65□□□□□ -1.5
PTCHD3Q3KNS1 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 AC109446.4-201ENST00000623235 2755 ntBASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 MFSD8-220ENST00000641243 1422 ntBASIC5.65□□□□□ -1.51
PTCHD3Q3KNS1 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC011503.2-201ENST00000594230 1500 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 ZNF849P-201ENST00000594711 1566 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AP002530.1-201ENST00000405705 684 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 RNA5SP178-201ENST00000410380 128 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 RN7SKP206-201ENST00000410823 293 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 RN7SKP29-201ENST00000410957 272 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC092648.1-201ENST00000425870 423 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AL035458.1-201ENST00000433096 585 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 HMGN1P36-201ENST00000446623 298 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 CALM1P2-201ENST00000452941 448 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC096992.1-201ENST00000459808 709 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 PDCL3P4-201ENST00000489621 720 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 RPL21P131-201ENST00000497298 483 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC105384.2-201ENST00000508433 640 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC011411.1-201ENST00000509592 876 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC119751.5-201ENST00000514077 770 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 DUX4L52-201ENST00000549363 777 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC090888.2-201ENST00000559765 1144 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC060780.2-201ENST00000589047 198 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC126175.1-201ENST00000617041 758 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AL355578.1-201ENST00000607405 1328 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 PDZK1P1-202ENST00000425209 1350 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC106872.5-201ENST00000508856 1416 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 NXF4-202ENST00000416098 1465 ntBASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.64□□□□□ -1.51
PTCHD3Q3KNS1 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 RNU4-28P-201ENST00000364739 141 ntBASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 RNU4-31P-201ENST00000384211 141 ntBASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 RNA5SP91-201ENST00000390902 119 ntBASIC5.63□□□□□ -1.51
PTCHD3Q3KNS1 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms