Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OR5AC4P-202ENST00000642086 985 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 TCP11X1-202ENST00000622971 1372 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AL133173.1-201ENST00000423458 397 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 SETP9-201ENST00000423837 832 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC099677.3-201ENST00000427081 395 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 KRT8P51-201ENST00000438938 274 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 RPS7P3-201ENST00000443360 580 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 RPL7P45-201ENST00000455851 743 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC090638.1-201ENST00000498296 909 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 RNU6-1102P-201ENST00000516149 96 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 RN7SKP288-201ENST00000516227 268 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 SCARNA6.1-201ENST00000516989 238 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC010503.3-201ENST00000594355 540 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC005776.1-201ENST00000603164 290 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC022919.1-201ENST00000624979 626 ntBASIC5.44□□□□□ -1.54
COL28A1Q2UY09 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL28A1Q2UY09 AC010266.2-201ENST00000564741 3255 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL592494.2-201ENST00000425455 1548 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 ZNF733P-202ENST00000444809 1573 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 HSPA8P18-201ENST00000439846 1928 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC138907.8-201ENST00000623981 2256 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 SNORD1C-201ENST00000363315 78 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 RNA5SP211-201ENST00000365516 117 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 RNU6-1176P-201ENST00000390955 107 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL158827.1-201ENST00000416300 391 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 MTND4LP13-201ENST00000425022 298 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 RPS27AP6-201ENST00000427962 448 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL445928.1-201ENST00000435545 222 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 MTCYBP29-201ENST00000436327 1006 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 TPT1P12-201ENST00000448968 492 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 FRG2FP-204ENST00000453982 852 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 OR11J2P-201ENST00000555298 907 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL049779.3-201ENST00000557141 606 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 MIR3934-201ENST00000579806 107 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 OR8G7P-201ENST00000616658 848 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 AC073869.10-201ENST00000642016 354 ntBASIC5.43□□□□□ -1.54
COL28A1Q2UY09 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL28A1Q2UY09 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms