Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 AC128716.1-201ENST00000475129 166 ntBASIC6.27□□□□□ -1.41
RNF4P78317 TRBV8-2-201ENST00000475637 270 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC098583.1-201ENST00000480875 255 ntBASIC6.27□□□□□ -1.41
RNF4P78317 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC6.27□□□□□ -1.41
RNF4P78317 MRPL57P6-201ENST00000506570 309 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 RN7SKP31-201ENST00000516354 278 ntBASIC6.27□□□□□ -1.41
RNF4P78317 RN7SKP244-201ENST00000516513 307 ntBASIC6.27□□□□□ -1.41
RNF4P78317 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 AC007068.2-201ENST00000543168 395 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 NTS-203ENST00000551529 801 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.27□□□□□ -1.41
RNF4P78317 PSMB7P1-201ENST00000556349 514 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 RN7SL199P-201ENST00000578752 281 ntBASIC6.27□□□□□ -1.41
RNF4P78317 RN7SL656P-201ENST00000579044 281 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC6.27□□□□□ -1.41
RNF4P78317 AC012417.1-201ENST00000582307 1039 ntBASIC6.27□□□□□ -1.41
RNF4P78317 RN7SL404P-201ENST00000582421 281 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC005771.1-201ENST00000585581 349 ntBASIC6.27□□□□□ -1.41
RNF4P78317 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AL390838.2-201ENST00000602394 274 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AL353621.2-201ENST00000605340 133 ntBASIC6.27□□□□□ -1.41
RNF4P78317 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 AL138693.1-201ENST00000622219 129 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC073348.1-201ENST00000623002 331 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC6.27□□□□□ -1.41
RNF4P78317 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.27□□□□□ -1.41
RNF4P78317 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 AC020658.2-201ENST00000559030 4020 ntBASIC6.27□□□□□ -1.41
RNF4P78317 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 Z97989.1-201ENST00000531702 2421 ntBASIC6.27□□□□□ -1.41
RNF4P78317 AC007993.1-201ENST00000621298 2430 ntBASIC6.27□□□□□ -1.41
RNF4P78317 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
RNF4P78317 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
RNF4P78317 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
RNF4P78317 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RNF4P78317 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
RNF4P78317 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
RNF4P78317 AC018628.1-201ENST00000624147 3819 ntBASIC6.26□□□□□ -1.41
RNF4P78317 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
RNF4P78317 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
RNF4P78317 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
RNF4P78317 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RNF4P78317 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC6.26□□□□□ -1.41
RNF4P78317 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
RNF4P78317 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
RNF4P78317 RNU5F-7P-201ENST00000363696 115 ntBASIC6.26□□□□□ -1.41
RNF4P78317 RNA5SP514-201ENST00000363717 111 ntBASIC6.26□□□□□ -1.41
RNF4P78317 RNU1-55P-201ENST00000365510 158 ntBASIC6.26□□□□□ -1.41
RNF4P78317 AC007066.1-201ENST00000392902 381 ntBASIC6.26□□□□□ -1.41
RNF4P78317 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 MIR1303-201ENST00000408625 86 ntBASIC6.26□□□□□ -1.41
RNF4P78317 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.26□□□□□ -1.41
RNF4P78317 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.26□□□□□ -1.41
RNF4P78317 AC008753.1-201ENST00000423096 284 ntBASIC6.26□□□□□ -1.41
RNF4P78317 SETP9-201ENST00000423837 832 ntBASIC6.26□□□□□ -1.41
RNF4P78317 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 ISCA1P1-201ENST00000426679 387 ntBASIC6.26□□□□□ -1.41
RNF4P78317 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
RNF4P78317 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC6.26□□□□□ -1.41
RNF4P78317 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.26□□□□□ -1.41
RNF4P78317 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC6.26□□□□□ -1.41
RNF4P78317 CRYGGP-201ENST00000443337 145 ntBASIC6.26□□□□□ -1.41
RNF4P78317 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.26□□□□□ -1.41
RNF4P78317 VN1R34P-201ENST00000447387 883 ntBASIC6.26□□□□□ -1.41
RNF4P78317 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.26□□□□□ -1.41
RNF4P78317 ARPC3P2-201ENST00000457786 533 ntBASIC6.26□□□□□ -1.41
RNF4P78317 RN7SL834P-201ENST00000461450 286 ntBASIC6.26□□□□□ -1.41
RNF4P78317 RPL30P9-201ENST00000465586 330 ntBASIC6.26□□□□□ -1.41
RNF4P78317 RPS3AP49-201ENST00000472161 790 ntBASIC6.26□□□□□ -1.41
RNF4P78317 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.26□□□□□ -1.41
RNF4P78317 RPL7AP23-201ENST00000482625 776 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms