Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HMGN2P25-201ENST00000486956 268 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AC020890.1-201ENST00000491837 504 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AC072052.1-201ENST00000496556 306 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXA1P55317 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 ASNSP4-201ENST00000511103 447 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXA1P55317 RNA5SP392-201ENST00000516905 112 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.76□□□□□ -1.65
FOXA1P55317 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXA1P55317 AC087477.6-201ENST00000559595 843 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.76□□□□□ -1.65
FOXA1P55317 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXA1P55317 AL022401.1-201ENST00000619498 108 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 CASC19-206ENST00000641028 1430 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AL031595.2-201ENST00000624215 19071 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
FOXA1P55317 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
FOXA1P55317 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
FOXA1P55317 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.75□□□□□ -1.65
FOXA1P55317 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.75□□□□□ -1.65
FOXA1P55317 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 SNURFL-201ENST00000309296 343 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
FOXA1P55317 AL592291.1-201ENST00000403830 352 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 BMS1P13-201ENST00000417301 885 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.75□□□□□ -1.65
FOXA1P55317 AC092162.1-201ENST00000432828 434 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.75□□□□□ -1.65
FOXA1P55317 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.75□□□□□ -1.65
FOXA1P55317 OR7E125P-201ENST00000443450 846 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.75□□□□□ -1.65
FOXA1P55317 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.75□□□□□ -1.65
FOXA1P55317 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.75□□□□□ -1.65
FOXA1P55317 OR2AO1P-201ENST00000476497 403 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 BX284632.1-201ENST00000478218 541 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 RN7SL101P-201ENST00000496350 279 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 AC138938.1-201ENST00000515431 782 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.75□□□□□ -1.65
FOXA1P55317 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC4.75□□□□□ -1.65
FOXA1P55317 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.75□□□□□ -1.65
FOXA1P55317 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.75□□□□□ -1.65
FOXA1P55317 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC4.75□□□□□ -1.65
FOXA1P55317 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.75□□□□□ -1.65
FOXA1P55317 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 AL512329.2-201ENST00000607350 548 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.75□□□□□ -1.65
FOXA1P55317 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.75□□□□□ -1.65
FOXA1P55317 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.75□□□□□ -1.65
FOXA1P55317 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
FOXA1P55317 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
FOXA1P55317 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
FOXA1P55317 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 DDX18P5-201ENST00000534547 1306 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
FOXA1P55317 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
FOXA1P55317 AL136116.2-201ENST00000404020 785 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AL359643.1-201ENST00000404109 423 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AL512422.1-201ENST00000407033 553 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AF186996.5-201ENST00000418098 904 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 E2F6P2-201ENST00000420708 748 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 DDX39BP1-205ENST00000422507 192 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.74□□□□□ -1.65
FOXA1P55317 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.74□□□□□ -1.65
FOXA1P55317 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.74□□□□□ -1.65
FOXA1P55317 AL163193.1-201ENST00000444895 788 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.74□□□□□ -1.65
FOXA1P55317 RNA5SP103-201ENST00000459503 118 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 COPS8P2-201ENST00000473228 627 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 COX6B1P5-201ENST00000509843 249 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC4.74□□□□□ -1.65
FOXA1P55317 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.74□□□□□ -1.65
FOXA1P55317 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
FOXA1P55317 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.74□□□□□ -1.65
FOXA1P55317 OR7E128P-201ENST00000532736 1024 ntBASIC4.74□□□□□ -1.65
FOXA1P55317 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms