Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.03□□□□□ -1.6
SHMT2P34897 AC026523.2-201ENST00000625039 7739 ntBASIC5.03□□□□□ -1.6
SHMT2P34897 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.03□□□□□ -1.6
SHMT2P34897 U8.4-201ENST00000363626 134 ntBASIC5.03□□□□□ -1.6
SHMT2P34897 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.03□□□□□ -1.6
SHMT2P34897 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.03□□□□□ -1.6
SHMT2P34897 RN7SKP16-201ENST00000410180 299 ntBASIC5.03□□□□□ -1.6
SHMT2P34897 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.03□□□□□ -1.6
SHMT2P34897 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.03□□□□□ -1.6
SHMT2P34897 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.03□□□□□ -1.6
SHMT2P34897 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SHMT2P34897 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.03□□□□□ -1.6
SHMT2P34897 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.03□□□□□ -1.6
SHMT2P34897 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.03□□□□□ -1.6
SHMT2P34897 MIR3936-201ENST00000584304 110 ntBASIC5.03□□□□□ -1.6
SHMT2P34897 AC011447.4-201ENST00000587562 111 ntBASIC5.03□□□□□ -1.6
SHMT2P34897 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.03□□□□□ -1.6
SHMT2P34897 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.03□□□□□ -1.6
SHMT2P34897 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.03□□□□□ -1.6
SHMT2P34897 AC016769.4-201ENST00000616893 535 ntBASIC5.03□□□□□ -1.6
SHMT2P34897 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.03□□□□□ -1.6
SHMT2P34897 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
SHMT2P34897 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.03□□□□□ -1.6
SHMT2P34897 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.03□□□□□ -1.6
SHMT2P34897 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.03□□□□□ -1.6
SHMT2P34897 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
SHMT2P34897 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SHMT2P34897 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 AL022393.1-201ENST00000625142 1677 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SHMT2P34897 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
SHMT2P34897 SPTLC1P2-201ENST00000407089 121 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 RN7SKP213-201ENST00000410746 298 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 DDX39BP1-205ENST00000422507 192 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.02□□□□□ -1.61
SHMT2P34897 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.02□□□□□ -1.61
SHMT2P34897 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.02□□□□□ -1.61
SHMT2P34897 AC004815.1-201ENST00000484185 331 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 AC109462.1-201ENST00000491087 368 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.02□□□□□ -1.61
SHMT2P34897 AC147055.3-201ENST00000510547 851 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 RNU6-1334P-201ENST00000516032 105 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 RN7SKP260-201ENST00000516907 149 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 AP002373.2-201ENST00000541631 1060 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 AC092490.3-201ENST00000545370 572 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 HMGN2P6-201ENST00000551091 273 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 OR11J2P-201ENST00000555298 907 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.02□□□□□ -1.61
SHMT2P34897 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.02□□□□□ -1.61
SHMT2P34897 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 RPSAP73-201ENST00000614820 330 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 BNIP3P41-202ENST00000616656 861 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 AC018445.2-201ENST00000622987 260 ntBASIC5.02□□□□□ -1.61
SHMT2P34897 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.02□□□□□ -1.61
SHMT2P34897 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SHMT2P34897 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SHMT2P34897 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.02□□□□□ -1.61
SHMT2P34897 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SHMT2P34897 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SHMT2P34897 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC5.01□□□□□ -1.61
SHMT2P34897 AC109780.1-201ENST00000451768 1344 ntBASIC5.01□□□□□ -1.61
SHMT2P34897 CR383656.5-201ENST00000547616 1340 ntBASIC5.01□□□□□ -1.61
SHMT2P34897 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SHMT2P34897 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SHMT2P34897 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.01□□□□□ -1.61
SHMT2P34897 SMG1P7-201ENST00000565246 2704 ntBASIC5.01□□□□□ -1.61
SHMT2P34897 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SHMT2P34897 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SHMT2P34897 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.01□□□□□ -1.61
SHMT2P34897 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SHMT2P34897 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SHMT2P34897 MIR765-201ENST00000390226 114 ntBASIC5.01□□□□□ -1.61
SHMT2P34897 RN7SKP278-201ENST00000410504 342 ntBASIC5.01□□□□□ -1.61
SHMT2P34897 BMS1P13-201ENST00000417301 885 ntBASIC5.01□□□□□ -1.61
SHMT2P34897 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SHMT2P34897 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.01□□□□□ -1.61
SHMT2P34897 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.01□□□□□ -1.61
SHMT2P34897 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.01□□□□□ -1.61
SHMT2P34897 RPSAP50-201ENST00000481955 852 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms