Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A3P25940 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A3P25940 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
COL5A3P25940 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A3P25940 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A3P25940 RNU4-64P-201ENST00000410795 131 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A3P25940 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A3P25940 UQCRBP1-201ENST00000421129 336 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 RPL12P28-201ENST00000430852 489 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 NDUFAF4P2-201ENST00000445374 520 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 RN7SL197P-201ENST00000466981 299 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A3P25940 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.12□□□□□ -1.43
COL5A3P25940 AL139041.1-201ENST00000605480 610 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 AL109618.2-201ENST00000605527 211 ntBASIC6.12□□□□□ -1.43
COL5A3P25940 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A3P25940 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A3P25940 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL5A3P25940 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL5A3P25940 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL5A3P25940 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL5A3P25940 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A3P25940 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.12□□□□□ -1.43
COL5A3P25940 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.12□□□□□ -1.43
COL5A3P25940 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 AC007618.1-201ENST00000366455 732 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 OR1L6-202ENST00000373684 1044 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 AL591848.1-201ENST00000413092 322 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 KCTD10P1-201ENST00000434203 625 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A3P25940 AC108751.3-201ENST00000461814 1020 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 RPL36AP41-201ENST00000493820 306 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A3P25940 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A3P25940 PRPF19P1-201ENST00000584766 898 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AC100847.1-201ENST00000611316 481 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL5A3P25940 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL5A3P25940 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 AP000756.2-201ENST00000624168 2567 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 AC010401.2-201ENST00000575137 4934 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
COL5A3P25940 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.11□□□□□ -1.43
COL5A3P25940 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 SMG1P7-201ENST00000565246 2704 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 OR4K17-201ENST00000315543 1032 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 RNA5SP509-201ENST00000364577 119 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 RN7SKP267-201ENST00000410381 285 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 RN7SKP263-201ENST00000411194 309 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 COX6CP13-201ENST00000428703 226 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.11□□□□□ -1.43
COL5A3P25940 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.11□□□□□ -1.43
COL5A3P25940 FHP1-201ENST00000442741 703 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AC108463.1-201ENST00000450258 347 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 PRPF38AP1-201ENST00000451976 933 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AC091868.1-201ENST00000508746 304 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AC020937.1-201ENST00000519677 1013 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC6.11□□□□□ -1.43
COL5A3P25940 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 AC012409.3-201ENST00000611343 981 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 MIR6716-201ENST00000613413 80 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 AC114781.5-201ENST00000615297 108 ntBASIC6.11□□□□□ -1.43
COL5A3P25940 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL5A3P25940 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL5A3P25940 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.1□□□□□ -1.43
COL5A3P25940 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC6.1□□□□□ -1.43
COL5A3P25940 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL5A3P25940 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL5A3P25940 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.1□□□□□ -1.43
COL5A3P25940 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
COL5A3P25940 RNA5SP241-201ENST00000391326 114 ntBASIC6.1□□□□□ -1.43
COL5A3P25940 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 LINC00993-201ENST00000420453 540 ntBASIC6.1□□□□□ -1.43
COL5A3P25940 AC006065.1-201ENST00000422539 802 ntBASIC6.1□□□□□ -1.43
COL5A3P25940 RPL7P57-201ENST00000423238 740 ntBASIC6.1□□□□□ -1.43
COL5A3P25940 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.1□□□□□ -1.43
COL5A3P25940 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.1□□□□□ -1.43
COL5A3P25940 RPSAP51-201ENST00000497462 645 ntBASIC6.1□□□□□ -1.43
COL5A3P25940 AC073358.1-201ENST00000505671 684 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms