Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC107294.1-201ENST00000609524 467 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 TLK1P1-201ENST00000456760 2440 ntBASIC4.96□□□□□ -1.62
COL6A3P12111 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A3P12111 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL6A3P12111 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.95□□□□□ -1.62
COL6A3P12111 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A3P12111 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A3P12111 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A3P12111 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 HIVEP2-203ENST00000367604 10032 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL6A3P12111 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC4.95□□□□□ -1.62
COL6A3P12111 PDE6A-204ENST00000613228 5398 ntTSL 5 BASIC4.95□□□□□ -1.62
COL6A3P12111 RPL6P9-201ENST00000466502 859 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.95□□□□□ -1.62
COL6A3P12111 MIR6715A-201ENST00000615929 79 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
COL6A3P12111 AC011815.3-201ENST00000624194 473 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC4.95□□□□□ -1.62
COL6A3P12111 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 AL158163.1-201ENST00000603915 1649 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A3P12111 OTUD7B-202ENST00000581312 8872 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A3P12111 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
COL6A3P12111 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 AL691482.1-201ENST00000453255 87 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 DUXAP2-201ENST00000519198 589 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A3P12111 AC005412.1-201ENST00000580812 1049 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 RN7SL600P-201ENST00000581811 299 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.95□□□□□ -1.62
COL6A3P12111 MIR6852-201ENST00000621699 66 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 CR392039.5-201ENST00000623201 510 ntBASIC4.95□□□□□ -1.62
COL6A3P12111 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.94□□□□□ -1.62
COL6A3P12111 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A3P12111 HMGN2P31-201ENST00000432430 273 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A3P12111 RPS29P2-201ENST00000479278 136 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 RPL36AP41-201ENST00000493820 306 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A3P12111 AC107982.3-201ENST00000584957 985 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A3P12111 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.94□□□□□ -1.62
COL6A3P12111 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC4.94□□□□□ -1.62
COL6A3P12111 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 GABRB3-204ENST00000541819 5934 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 SNORA73.2-201ENST00000364946 201 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 RN7SKP17-201ENST00000411242 351 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 AL139095.3-201ENST00000419672 1203 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 RN7SL441P-201ENST00000492388 296 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A3P12111 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A3P12111 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.94□□□□□ -1.62
COL6A3P12111 AL451086.1-201ENST00000605596 223 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A3P12111 MIR3651-201ENST00000630427 90 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 FRMPD4-202ENST00000616992 7916 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 RNU1-132P-201ENST00000364300 164 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 AP000907.1-201ENST00000428428 510 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 VN1R105P-201ENST00000486595 910 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A3P12111 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A3P12111 AC069061.3-201ENST00000582254 823 ntBASIC4.94□□□□□ -1.62
COL6A3P12111 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A3P12111 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
COL6A3P12111 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.93□□□□□ -1.62
COL6A3P12111 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 PCAT14-202ENST00000627127 3935 ntBASIC4.93□□□□□ -1.62
COL6A3P12111 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL6A3P12111 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL6A3P12111 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms