Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS29Q9UBQ0 AL731532.2-201ENST00000623542 1953 ntBASIC4.82□□□□□ -1.64
VPS29Q9UBQ0 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC133552.1-201ENST00000569988 4007 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 RNA5SP435-201ENST00000364044 108 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 ATP5HP3-201ENST00000396994 486 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 LRRC37BP1-201ENST00000398851 714 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 RN7SKP206-201ENST00000410823 293 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AL389915.2-201ENST00000454576 441 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 SEPT7P3-201ENST00000455017 621 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 GYG1P1-201ENST00000460864 698 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC097484.1-201ENST00000471148 389 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC091544.1-201ENST00000484702 348 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC010350.1-201ENST00000504908 231 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC106872.4-201ENST00000510050 523 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC012339.2-201ENST00000523996 453 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC006272.2-201ENST00000594725 163 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC037198.3-201ENST00000616754 526 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC016542.2-201ENST00000624201 619 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 MIR4302-201ENST00000638058 60 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC068446.1-201ENST00000556425 1549 ntBASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS29Q9UBQ0 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 OR9K1P-202ENST00000641111 3217 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC003985.2-201ENST00000562268 1669 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 DDX18P6-201ENST00000450119 1997 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 ZNF733P-202ENST00000444809 1573 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 RPL10P10-201ENST00000403509 664 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 QRSL1P2-201ENST00000418582 964 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 DDX39BP1-205ENST00000422507 192 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC092647.2-201ENST00000452998 253 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AL691482.1-201ENST00000453255 87 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 SNRPCP2-201ENST00000504370 475 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 RPL7L1P4-201ENST00000513004 707 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 BNIP3P1-201ENST00000547295 580 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 NMNAT1P1-201ENST00000554095 876 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC004825.1-201ENST00000555068 586 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC007342.5-201ENST00000571340 2142 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AP000864.1-201ENST00000609424 650 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AC015660.5-201ENST00000623238 564 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS29Q9UBQ0 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS29Q9UBQ0 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms