Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC068446.1-201ENST00000556425 1549 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 CNOT7P2-201ENST00000441051 832 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AL606490.1-201ENST00000452266 765 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 RN7SL172P-201ENST00000460535 303 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC079841.1-201ENST00000481228 950 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC010350.1-201ENST00000504908 231 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC011447.4-201ENST00000587562 111 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC105254.2-201ENST00000603636 436 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 SOCS5P3-201ENST00000425115 1576 ntBASIC5.03□□□□□ -1.6
TREX1Q9NSU2 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
TREX1Q9NSU2 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AL731532.2-201ENST00000623542 1953 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 NXF4-202ENST00000416098 1465 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 SNURFL-201ENST00000309296 343 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 RNU6-171P-201ENST00000384354 107 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 U3.36-201ENST00000408418 213 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 OR5M12P-201ENST00000423388 929 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AL136455.1-201ENST00000441083 1240 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 GTF3AP5-201ENST00000442645 697 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 RPL34P20-201ENST00000442771 351 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC012512.1-201ENST00000446594 718 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 TCEA1P1-201ENST00000449716 880 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 BX284632.1-201ENST00000478218 541 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 USP9YP2-201ENST00000504503 1000 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 USP9YP1-201ENST00000513521 1002 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 ENPP7P9-201ENST00000514456 627 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AL390334.1-201ENST00000556395 450 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC007225.2-201ENST00000562529 256 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AL627230.1-201ENST00000613077 211 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AL591926.8-201ENST00000616876 211 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC015914.2-201ENST00000618167 288 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC004808.2-201ENST00000627965 773 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
TREX1Q9NSU2 AC003985.2-201ENST00000562268 1669 ntBASIC5.02□□□□□ -1.61
TREX1Q9NSU2 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 THAP12P5-201ENST00000405864 2275 ntBASIC5.01□□□□□ -1.61
TREX1Q9NSU2 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
TREX1Q9NSU2 RNA5SP296-201ENST00000410523 111 ntBASIC5.01□□□□□ -1.61
TREX1Q9NSU2 CTSL3P-202ENST00000412179 788 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms