Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CHMP4AQ9BY43 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 OR6C64P-201ENST00000419708 825 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AL590623.1-201ENST00000427864 105 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 MTCO1P11-201ENST00000429111 1528 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 RPS24P8-201ENST00000431490 402 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 MTND6P18-201ENST00000439477 513 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 KRTAP8-2P-201ENST00000440620 186 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AC092691.2-201ENST00000461787 803 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 MTND6P6-201ENST00000478031 263 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 RNU6-1308P-201ENST00000516817 103 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 KYNUP3-201ENST00000574386 1341 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AC079395.2-201ENST00000610982 737 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AC022467.1-201ENST00000614738 749 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 MIR6729-201ENST00000618194 65 ntBASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CHMP4AQ9BY43 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 FTO-203ENST00000460382 1517 ntTSL 5 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC005042.1-201ENST00000393397 800 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 CYP2AC1P-201ENST00000407830 1173 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 DPY19L1P2-201ENST00000426647 915 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 RPS11P7-201ENST00000442125 465 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC019185.1-201ENST00000442718 389 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 IGBP1P3-201ENST00000447449 1000 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC018638.3-201ENST00000461273 132 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 OR2AO1P-201ENST00000476497 403 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 RPL7P39-201ENST00000481157 744 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC005912.1-201ENST00000495392 255 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 ST13P12-201ENST00000508958 1094 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 RN7SKP99-201ENST00000517028 307 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC122688.1-201ENST00000541494 223 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC090948.2-201ENST00000607363 564 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 AC131238.1-201ENST00000617135 328 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 uc_338.9-201ENST00000617424 182 ntBASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC7.13□□□□□ -1.27
CHMP4AQ9BY43 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 CIR1P2-201ENST00000514821 1342 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 SNORA51.1-201ENST00000363243 140 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC009804.1-201ENST00000400949 179 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 RN7SKP17-201ENST00000411242 351 ntBASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC7.12□□□□□ -1.27
CHMP4AQ9BY43 AC105402.1-201ENST00000413336 545 ntBASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms