Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 SNORA17A-201ENST00000391185 133 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 SDHDP6-201ENST00000414693 480 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 MARK2P12-201ENST00000420129 585 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 RPL34P3-201ENST00000421454 338 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC104843.2-201ENST00000427666 297 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 BX119321.1-201ENST00000428912 797 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 RPS20P1-201ENST00000434853 354 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC242426.1-201ENST00000435270 960 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 RPL12P46-201ENST00000436610 195 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 PPIAP21-201ENST00000464473 501 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 HMGB1P3-201ENST00000502802 616 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC093770.1-201ENST00000511559 571 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 MTATP6P1-201ENST00000514057 681 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 SCARNA6.1-201ENST00000516989 238 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AL121594.2-201ENST00000541658 472 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC090953.1-201ENST00000604305 1092 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 SNORA17.5-201ENST00000630429 132 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 AC087565.3-203ENST00000641018 837 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 AL139254.3-201ENST00000641097 674 ntBASIC5.39□□□□□ -1.55
VMP1Q96GC9 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VMP1Q96GC9 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
VMP1Q96GC9 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC011155.1-201ENST00000316512 456 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 TMSB4XP4-201ENST00000323496 618 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 SNORA27.3-201ENST00000364937 134 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 CHMP1B2P-201ENST00000399581 597 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 OR2AT2P-201ENST00000413438 905 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC127526.2-201ENST00000426436 775 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC092447.2-201ENST00000435487 669 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 NPM1P33-201ENST00000438918 872 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AL161636.2-201ENST00000445179 927 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 SETP20-201ENST00000457046 852 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC006539.1-201ENST00000481419 501 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC090543.1-201ENST00000492168 485 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 RPS27AP16-201ENST00000492222 470 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC005912.1-201ENST00000495392 255 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC108157.1-201ENST00000510511 539 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC074255.1-201ENST00000511259 501 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 SNORA48.9-201ENST00000516419 162 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC112191.2-201ENST00000522428 333 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 IGBP1P1-201ENST00000554337 1009 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC090948.2-201ENST00000607363 564 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AC022919.1-201ENST00000624979 626 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.38□□□□□ -1.55
VMP1Q96GC9 CASC19-222ENST00000641321 1173 ntBASIC5.38□□□□□ -1.55
VMP1Q96GC9 MIR193BHG-214ENST00000641765 509 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 163.9 ms