Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXA1P55317 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 MIR143-201ENST00000385300 106 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXA1P55317 AC017078.1-201ENST00000416146 368 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 EIF4HP2-201ENST00000424380 563 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 NPM1P19-201ENST00000450070 712 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.78□□□□□ -1.64
FOXA1P55317 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 AC104109.1-201ENST00000498563 436 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 RNU6-513P-201ENST00000516104 104 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 RNA5SP43-201ENST00000516559 110 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.78□□□□□ -1.64
FOXA1P55317 IGLVIV-64-201ENST00000518581 301 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 OR51C1P-201ENST00000608504 942 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 AC126915.2-201ENST00000610957 190 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 AL049794.2-201ENST00000616301 365 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
FOXA1P55317 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXA1P55317 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC4.78□□□□□ -1.64
FOXA1P55317 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.78□□□□□ -1.64
FOXA1P55317 MUC2-202ENST00000613187 4845 ntBASIC4.78□□□□□ -1.64
FOXA1P55317 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
FOXA1P55317 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
FOXA1P55317 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.77□□□□□ -1.65
FOXA1P55317 AL603750.1-201ENST00000624216 1717 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXA1P55317 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 MIR323A-201ENST00000362199 86 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXA1P55317 CHEK2P5-201ENST00000423877 246 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 FAR2P1-206ENST00000449736 709 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 RN7SL517P-201ENST00000462240 305 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 AC097484.1-201ENST00000471148 389 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.77□□□□□ -1.65
FOXA1P55317 RPL7P39-201ENST00000481157 744 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 OR2A3P-201ENST00000493774 953 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXA1P55317 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXA1P55317 IGKV3D-34-201ENST00000522638 302 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXA1P55317 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.77□□□□□ -1.65
FOXA1P55317 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.77□□□□□ -1.65
FOXA1P55317 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 AC005377.1-201ENST00000605126 456 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 MIR8069-1-201ENST00000616627 86 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 AC022106.2-201ENST00000620114 757 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 MIR8069-2-201ENST00000621412 86 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 AP001642.1-201ENST00000624727 2117 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 AL672167.1-203ENST00000641299 2975 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 AC126323.6-202ENST00000568092 3511 ntBASIC4.77□□□□□ -1.65
FOXA1P55317 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
FOXA1P55317 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
FOXA1P55317 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.76□□□□□ -1.65
FOXA1P55317 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 NXF4-202ENST00000416098 1465 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.76□□□□□ -1.65
FOXA1P55317 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 SCARNA15-201ENST00000607520 4325 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
FOXA1P55317 SNORA66-201ENST00000384792 133 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 AL357515.1-201ENST00000402967 542 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.76□□□□□ -1.65
FOXA1P55317 MIR1271-201ENST00000408537 86 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.76□□□□□ -1.65
FOXA1P55317 RPL12P18-201ENST00000437175 325 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AL391987.1-201ENST00000441025 200 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXA1P55317 AC000111.2-201ENST00000448200 210 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.76□□□□□ -1.65
FOXA1P55317 PPIAP20-201ENST00000449839 135 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.76□□□□□ -1.65
FOXA1P55317 AL389915.2-201ENST00000454576 441 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
FOXA1P55317 AL591473.1-201ENST00000464297 313 ntBASIC4.76□□□□□ -1.65
FOXA1P55317 RN7SL174P-201ENST00000475578 289 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms