Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.93□□□□□ -1.46
BDNFP23560 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.93□□□□□ -1.46
BDNFP23560 SUMO2P14-201ENST00000604488 293 ntBASIC5.93□□□□□ -1.46
BDNFP23560 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.93□□□□□ -1.46
BDNFP23560 AL512624.1-201ENST00000613638 469 ntBASIC5.93□□□□□ -1.46
BDNFP23560 AC025574.2-201ENST00000615621 514 ntBASIC5.93□□□□□ -1.46
BDNFP23560 AC132068.1-201ENST00000623805 459 ntBASIC5.93□□□□□ -1.46
BDNFP23560 AL118508.4-201ENST00000624142 1176 ntBASIC5.93□□□□□ -1.46
BDNFP23560 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BDNFP23560 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.93□□□□□ -1.46
BDNFP23560 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
BDNFP23560 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BDNFP23560 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
BDNFP23560 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
BDNFP23560 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BDNFP23560 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.93□□□□□ -1.46
BDNFP23560 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.93□□□□□ -1.46
BDNFP23560 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
BDNFP23560 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
BDNFP23560 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.92□□□□□ -1.46
BDNFP23560 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
BDNFP23560 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 CCT8P1-201ENST00000413611 1657 ntBASIC5.92□□□□□ -1.46
BDNFP23560 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
BDNFP23560 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.92□□□□□ -1.46
BDNFP23560 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 RNU6-452P-201ENST00000384406 107 ntBASIC5.92□□□□□ -1.46
BDNFP23560 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 AC005522.1-201ENST00000395416 346 ntBASIC5.92□□□□□ -1.46
BDNFP23560 OR1F12-201ENST00000402365 945 ntBASIC5.92□□□□□ -1.46
BDNFP23560 GABARAPL3-201ENST00000412799 354 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.92□□□□□ -1.46
BDNFP23560 AC073069.1-201ENST00000428657 441 ntBASIC5.92□□□□□ -1.46
BDNFP23560 RPL12P28-201ENST00000430852 489 ntBASIC5.92□□□□□ -1.46
BDNFP23560 ZNF965P-201ENST00000432501 817 ntBASIC5.92□□□□□ -1.46
BDNFP23560 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.92□□□□□ -1.46
BDNFP23560 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.92□□□□□ -1.46
BDNFP23560 snoU13.29-201ENST00000459370 104 ntBASIC5.92□□□□□ -1.46
BDNFP23560 RPS26P39-201ENST00000469206 341 ntBASIC5.92□□□□□ -1.46
BDNFP23560 SIAH1P1-201ENST00000479411 923 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC093663.2-201ENST00000484625 313 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC108693.1-201ENST00000496068 432 ntBASIC5.92□□□□□ -1.46
BDNFP23560 RN7SKP141-201ENST00000516167 338 ntBASIC5.92□□□□□ -1.46
BDNFP23560 SCARNA21.2-201ENST00000516600 166 ntBASIC5.92□□□□□ -1.46
BDNFP23560 RNU6-347P-201ENST00000516658 105 ntBASIC5.92□□□□□ -1.46
BDNFP23560 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC5.92□□□□□ -1.46
BDNFP23560 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 AC007225.2-201ENST00000562529 256 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.92□□□□□ -1.46
BDNFP23560 AC090948.2-201ENST00000607363 564 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AP000864.1-201ENST00000609424 650 ntBASIC5.92□□□□□ -1.46
BDNFP23560 MIR7973-1-201ENST00000614683 76 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC007204.2-201ENST00000615022 616 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC016957.2-201ENST00000616998 848 ntBASIC5.92□□□□□ -1.46
BDNFP23560 WBP1LP8-201ENST00000617401 327 ntBASIC5.92□□□□□ -1.46
BDNFP23560 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC5.92□□□□□ -1.46
BDNFP23560 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
BDNFP23560 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
BDNFP23560 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
BDNFP23560 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.92□□□□□ -1.46
BDNFP23560 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.92□□□□□ -1.46
BDNFP23560 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 AC068870.1-201ENST00000563737 2455 ntBASIC5.91□□□□□ -1.46
BDNFP23560 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
BDNFP23560 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
BDNFP23560 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
BDNFP23560 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
BDNFP23560 RNA5SP319-201ENST00000362768 119 ntBASIC5.91□□□□□ -1.46
BDNFP23560 RNA5SP326-201ENST00000363209 110 ntBASIC5.91□□□□□ -1.46
BDNFP23560 SNORA62.2-201ENST00000364672 152 ntBASIC5.91□□□□□ -1.46
BDNFP23560 RNU4-2-201ENST00000365668 141 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC019155.1-201ENST00000382242 574 ntBASIC5.91□□□□□ -1.46
BDNFP23560 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.91□□□□□ -1.46
BDNFP23560 RN7SKP59-201ENST00000410520 314 ntBASIC5.91□□□□□ -1.46
BDNFP23560 RNU4-74P-201ENST00000411280 161 ntBASIC5.91□□□□□ -1.46
BDNFP23560 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.91□□□□□ -1.46
BDNFP23560 RNGTTP1-201ENST00000420965 728 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AC021876.1-201ENST00000425959 359 ntBASIC5.91□□□□□ -1.46
BDNFP23560 NPM1P24-201ENST00000428039 894 ntBASIC5.91□□□□□ -1.46
BDNFP23560 MTCO1P52-201ENST00000433928 531 ntBASIC5.91□□□□□ -1.46
BDNFP23560 AL031663.1-201ENST00000437445 219 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms