Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL6A1P12109 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.61□□□□□ -1.35
COL6A1P12109 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL6A1P12109 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.61□□□□□ -1.35
COL6A1P12109 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL6A1P12109 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC025470.1-201ENST00000510053 2032 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 Y_RNA.169-201ENST00000363745 96 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 HMGB3P7-201ENST00000400214 611 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 UBE2V1P11-201ENST00000411559 285 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 RPL37P18-201ENST00000411602 243 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 SLC4A1APP1-201ENST00000419995 602 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 FABP7P2-201ENST00000429946 379 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 MTCO1P45-201ENST00000431457 267 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AL445928.1-201ENST00000435545 222 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 CCRL1P1-201ENST00000449542 1053 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC108161.1-201ENST00000461060 402 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC022215.1-201ENST00000481770 362 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 RN7SL808P-201ENST00000496066 299 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 OR5H3P-201ENST00000502817 919 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AC008629.2-201ENST00000503783 483 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AC073581.1-201ENST00000519036 575 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 IGLV3-30-201ENST00000524362 298 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.6□□□□□ -1.35
COL6A1P12109 HMGN2P6-201ENST00000551091 273 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC6.6□□□□□ -1.35
COL6A1P12109 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC009094.1-201ENST00000564443 426 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 RNU4ATAC-201ENST00000580972 127 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC6.6□□□□□ -1.35
COL6A1P12109 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.6□□□□□ -1.35
COL6A1P12109 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC025175.1-201ENST00000606482 759 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.6□□□□□ -1.35
COL6A1P12109 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 AL161756.3-201ENST00000641216 2071 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.6□□□□□ -1.35
COL6A1P12109 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL6A1P12109 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 AP005432.1-201ENST00000580891 3485 ntBASIC6.6□□□□□ -1.35
COL6A1P12109 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.6□□□□□ -1.35
COL6A1P12109 AC021755.1-201ENST00000559747 1447 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 AC110373.1-201ENST00000505994 3505 ntBASIC6.59□□□□□ -1.35
COL6A1P12109 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.59□□□□□ -1.35
COL6A1P12109 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL6A1P12109 YES1P1-201ENST00000418510 1628 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms