Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC105254.2-201ENST00000603636 436 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 Z95327.3-201ENST00000610385 572 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL627230.1-201ENST00000613077 211 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL591926.8-201ENST00000616876 211 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL672167.1-204ENST00000641875 3017 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC068446.1-201ENST00000556425 1549 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 MIR1286-201ENST00000408112 78 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 CTSL3P-202ENST00000412179 788 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 QRSL1P2-201ENST00000418582 964 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC013429.2-201ENST00000418798 781 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 RAD1P2-201ENST00000446414 663 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 TCEA1P1-201ENST00000449716 880 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AL513343.1-201ENST00000451818 792 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 RPL7P39-201ENST00000481157 744 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC022467.1-201ENST00000614738 749 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC003001.2-201ENST00000616294 831 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 AC099494.2-201ENST00000623371 978 ntBASIC5.42□□□□□ -1.54
SIX2Q9NPC8 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
SIX2Q9NPC8 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 BRAFP1-201ENST00000445336 2703 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AL022393.1-201ENST00000625142 1677 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC007996.1-201ENST00000620414 2821 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 DHFRP5-201ENST00000406944 564 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 MTATP6P11-201ENST00000428071 670 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC012512.1-201ENST00000446594 718 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 RPS26P39-201ENST00000469206 341 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC097484.1-201ENST00000471148 389 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC117394.1-201ENST00000477323 567 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 TMF1P1-201ENST00000576058 373 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 MIR4489-201ENST00000578869 62 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC087468.1-201ENST00000604365 630 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC015914.2-201ENST00000618167 288 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC008115.4-201ENST00000619780 775 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AL449283.1-201ENST00000602631 3403 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.41□□□□□ -1.54
SIX2Q9NPC8 OR9K1P-202ENST00000641111 3217 ntBASIC5.41□□□□□ -1.54
SIX2Q9NPC8 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms