Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC092747.4-201ENST00000620519 1861 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS35Q96QK1 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 SMG1P7-201ENST00000565246 2704 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 OR9G4-201ENST00000302957 984 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 GPS2P1-201ENST00000411761 986 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AL355433.1-201ENST00000422804 300 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC090804.1-201ENST00000448870 490 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 RPS4XP1-201ENST00000482189 787 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC021193.1-201ENST00000511607 420 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC011270.1-201ENST00000558606 583 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 AC009597.2-201ENST00000604659 592 ntBASIC5.24□□□□□ -1.57
VPS35Q96QK1 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS35Q96QK1 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
VPS35Q96QK1 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.24□□□□□ -1.57
VPS35Q96QK1 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS35Q96QK1 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS35Q96QK1 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS35Q96QK1 RNU6-249P-201ENST00000363016 102 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS35Q96QK1 MIR223-201ENST00000385204 110 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 GTF3AP1-201ENST00000416942 1004 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 NANOGP4-201ENST00000427230 913 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 HSPD1P12-201ENST00000429127 1069 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 CNOT7P2-201ENST00000441051 832 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC245047.2-201ENST00000441060 530 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL163193.1-201ENST00000444895 788 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC239798.3-201ENST00000454459 408 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 Z92846.1-201ENST00000456203 268 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 SEPT14P1-201ENST00000458703 648 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 CCNHP1-201ENST00000513311 678 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC006427.1-201ENST00000514359 712 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 SCARNA21.2-201ENST00000516600 166 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 RNA5SP34-201ENST00000516887 130 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC004825.1-201ENST00000555068 586 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 MIR1269B-201ENST00000580405 75 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC095055.1-201ENST00000603472 1113 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC008814.1-201ENST00000603797 406 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL162431.4-201ENST00000604674 411 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC126915.2-201ENST00000610957 190 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AC011493.1-201ENST00000596753 1632 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL590763.1-201ENST00000398297 1545 ntBASIC5.23□□□□□ -1.57
VPS35Q96QK1 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
VPS35Q96QK1 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.22□□□□□ -1.57
VPS35Q96QK1 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
VPS35Q96QK1 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 U3.3-201ENST00000362986 216 ntBASIC5.22□□□□□ -1.57
VPS35Q96QK1 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms