Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 OSTCP5-201ENST00000425293 453 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AL035407.1-201ENST00000429211 571 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 CLUHP1-201ENST00000435012 1190 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AP000281.1-201ENST00000444036 316 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC006326.1-201ENST00000445465 787 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC044797.1-201ENST00000445744 679 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 RPS26P39-201ENST00000469206 341 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 RPL21P18-201ENST00000469899 480 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 HPRT1P1-201ENST00000509498 657 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 SNORA70.20-201ENST00000516848 126 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC105185.1-201ENST00000518705 535 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.11□□□□□ -1.43
USP39Q53GS9 ZDHHC20P3-201ENST00000531576 336 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 OR7E128P-201ENST00000532736 1024 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.11□□□□□ -1.43
USP39Q53GS9 C1GALT1P1-201ENST00000548895 1089 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC6.11□□□□□ -1.43
USP39Q53GS9 OR4H6P-201ENST00000563771 921 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 MIR4801-201ENST00000582704 82 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AL589674.2-201ENST00000604304 337 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 FAM27E4-201ENST00000605259 342 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC093673.2-201ENST00000609674 331 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC092106.3-201ENST00000611308 722 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC069234.4-201ENST00000621276 412 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 MIR193BHG-214ENST00000641765 509 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.11□□□□□ -1.43
USP39Q53GS9 AC012254.3-201ENST00000591183 2117 ntBASIC6.11□□□□□ -1.43
USP39Q53GS9 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
USP39Q53GS9 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
USP39Q53GS9 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP39Q53GS9 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC6.1□□□□□ -1.43
USP39Q53GS9 GUCY1B2-204ENST00000531898 1979 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 MTHFD2P5-201ENST00000320415 844 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 HMGB3P19-201ENST00000403971 560 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 GSTA8P-201ENST00000404253 637 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AL096711.1-201ENST00000404780 554 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 HMGA1P8-201ENST00000414130 321 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AL158050.1-201ENST00000416077 457 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 MTND4LP11-201ENST00000422184 280 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC6.1□□□□□ -1.43
USP39Q53GS9 DLGAP5P1-201ENST00000430307 464 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
USP39Q53GS9 MTND4P18-201ENST00000447010 465 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 NPM1P13-201ENST00000452663 865 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC020779.1-201ENST00000478757 796 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AC114728.1-201ENST00000488289 483 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AC083795.1-201ENST00000491760 320 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 EIF3LP3-201ENST00000495197 822 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.1□□□□□ -1.43
USP39Q53GS9 RNA5SP362-201ENST00000516048 118 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 RNU6-889P-201ENST00000517189 103 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 IGKV2-19-201ENST00000518132 283 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 IGKV2-18-201ENST00000522607 343 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 OR56A7P-201ENST00000524865 941 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 OR4A40P-201ENST00000533878 948 ntBASIC6.1□□□□□ -1.43
USP39Q53GS9 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.1□□□□□ -1.43
USP39Q53GS9 AC010547.6-201ENST00000571789 193 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms