Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 DUX4L52-201ENST00000549363 777 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC011840.5-201ENST00000582125 771 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC005242.1-201ENST00000585658 438 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 MTCO2P22-201ENST00000603246 681 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 RNF138P2-201ENST00000603490 592 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC087283.1-201ENST00000604029 1074 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 FAM25E-202ENST00000608562 189 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC009163.6-201ENST00000612367 342 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AP002505.2-201ENST00000623585 696 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AL390318.1-201ENST00000624564 687 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 AC106858.1-201ENST00000637497 429 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 OR52B5P-202ENST00000641118 1110 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 SAMMSON-209ENST00000641222 1100 ntBASIC5.48□□□□□ -1.53
COL28A1Q2UY09 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL28A1Q2UY09 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC007938.2-201ENST00000604666 2634 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC020656.2-201ENST00000613291 5309 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC026523.2-201ENST00000625039 7739 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 BCORP1-203ENST00000513194 5093 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RNA5SP183-201ENST00000362452 119 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RNA5SP305-201ENST00000362665 119 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 MYL6P5-201ENST00000412707 459 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 NENFP1-201ENST00000419476 466 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AL356981.1-201ENST00000454879 684 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC104164.1-201ENST00000460282 590 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC007537.2-201ENST00000472093 511 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 NDUFA5P9-201ENST00000472609 340 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC068587.1-201ENST00000483613 781 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RN7SL205P-201ENST00000490174 284 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC021087.2-201ENST00000504656 1203 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 MTCO1P31-201ENST00000506355 492 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 HMGN1P15-201ENST00000513870 295 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 NRBF2P4-201ENST00000520874 850 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC137768.1-201ENST00000549998 553 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC079148.1-201ENST00000565944 819 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RN7SL52P-201ENST00000584271 284 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 ZNF92P2-201ENST00000600543 1059 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RN7SL722P-201ENST00000617780 284 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 RN7SL565P-201ENST00000618246 284 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 AC022164.1-201ENST00000568767 2673 ntBASIC5.47□□□□□ -1.53
COL28A1Q2UY09 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
COL28A1Q2UY09 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
COL28A1Q2UY09 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
COL28A1Q2UY09 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL28A1Q2UY09 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
COL28A1Q2UY09 SPATA2P1-201ENST00000431223 2055 ntBASIC5.46□□□□□ -1.53
COL28A1Q2UY09 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.46□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms