Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL163193.1-201ENST00000444895 788 ntBASIC4.87□□□□□ -1.63
LIM2P55344 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.87□□□□□ -1.63
LIM2P55344 RPS18P6-201ENST00000476880 458 ntBASIC4.87□□□□□ -1.63
LIM2P55344 SCARNA21.2-201ENST00000516600 166 ntBASIC4.87□□□□□ -1.63
LIM2P55344 HNRNPRP2-201ENST00000528421 743 ntBASIC4.87□□□□□ -1.63
LIM2P55344 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.87□□□□□ -1.63
LIM2P55344 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 RPSAP73-201ENST00000614820 330 ntBASIC4.87□□□□□ -1.63
LIM2P55344 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.87□□□□□ -1.63
LIM2P55344 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.87□□□□□ -1.63
LIM2P55344 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.87□□□□□ -1.63
LIM2P55344 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC4.87□□□□□ -1.63
LIM2P55344 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIM2P55344 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.86□□□□□ -1.63
LIM2P55344 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LIM2P55344 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 DDX18P6-201ENST00000450119 1997 ntBASIC4.86□□□□□ -1.63
LIM2P55344 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 RPL23P2-201ENST00000320371 421 ntBASIC4.86□□□□□ -1.63
LIM2P55344 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LIM2P55344 AL390316.1-201ENST00000406279 553 ntBASIC4.86□□□□□ -1.63
LIM2P55344 U3.36-201ENST00000408418 213 ntBASIC4.86□□□□□ -1.63
LIM2P55344 RN7SKP273-201ENST00000411392 314 ntBASIC4.86□□□□□ -1.63
LIM2P55344 AC211486.3-201ENST00000412694 621 ntBASIC4.86□□□□□ -1.63
LIM2P55344 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.86□□□□□ -1.63
LIM2P55344 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.86□□□□□ -1.63
LIM2P55344 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.86□□□□□ -1.63
LIM2P55344 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.86□□□□□ -1.63
LIM2P55344 AC092647.2-201ENST00000452998 253 ntBASIC4.86□□□□□ -1.63
LIM2P55344 RN7SL177P-201ENST00000476596 299 ntBASIC4.86□□□□□ -1.63
LIM2P55344 RN7SL727P-201ENST00000482164 296 ntBASIC4.86□□□□□ -1.63
LIM2P55344 COX6B1P2-201ENST00000489624 230 ntBASIC4.86□□□□□ -1.63
LIM2P55344 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 AC006499.3-201ENST00000506077 748 ntBASIC4.86□□□□□ -1.63
LIM2P55344 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.86□□□□□ -1.63
LIM2P55344 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.86□□□□□ -1.63
LIM2P55344 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.86□□□□□ -1.63
LIM2P55344 CCNHP1-201ENST00000513311 678 ntBASIC4.86□□□□□ -1.63
LIM2P55344 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 IGLV2-28-201ENST00000520681 304 ntBASIC4.86□□□□□ -1.63
LIM2P55344 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 AC022832.1-201ENST00000530718 645 ntBASIC4.86□□□□□ -1.63
LIM2P55344 AP002373.2-201ENST00000541631 1060 ntBASIC4.86□□□□□ -1.63
LIM2P55344 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 LSM3P2-201ENST00000551246 273 ntBASIC4.86□□□□□ -1.63
LIM2P55344 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 AP005432.2-201ENST00000608162 586 ntBASIC4.86□□□□□ -1.63
LIM2P55344 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.86□□□□□ -1.63
LIM2P55344 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.86□□□□□ -1.63
LIM2P55344 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
LIM2P55344 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
LIM2P55344 AP005432.1-201ENST00000580891 3485 ntBASIC4.86□□□□□ -1.63
LIM2P55344 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
LIM2P55344 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIM2P55344 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIM2P55344 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
LIM2P55344 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LIM2P55344 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.85□□□□□ -1.63
LIM2P55344 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIM2P55344 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIM2P55344 Y_RNA.62-201ENST00000362840 99 ntBASIC4.85□□□□□ -1.63
LIM2P55344 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIM2P55344 MIR1178-201ENST00000408396 91 ntBASIC4.85□□□□□ -1.63
LIM2P55344 CBX1P3-201ENST00000413296 527 ntBASIC4.85□□□□□ -1.63
LIM2P55344 PCNPP4-201ENST00000414817 517 ntBASIC4.85□□□□□ -1.63
LIM2P55344 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.85□□□□□ -1.63
LIM2P55344 SETP9-201ENST00000423837 832 ntBASIC4.85□□□□□ -1.63
LIM2P55344 AC005532.2-201ENST00000467154 373 ntBASIC4.85□□□□□ -1.63
LIM2P55344 AC074386.1-201ENST00000476560 767 ntBASIC4.85□□□□□ -1.63
LIM2P55344 AC008953.1-201ENST00000497334 318 ntBASIC4.85□□□□□ -1.63
LIM2P55344 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.85□□□□□ -1.63
LIM2P55344 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.85□□□□□ -1.63
LIM2P55344 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.85□□□□□ -1.63
LIM2P55344 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.85□□□□□ -1.63
LIM2P55344 HAUS8P1-201ENST00000549005 542 ntBASIC4.85□□□□□ -1.63
LIM2P55344 VN1R81P-201ENST00000602085 372 ntBASIC4.85□□□□□ -1.63
LIM2P55344 TAS2R6P-201ENST00000605022 826 ntBASIC4.85□□□□□ -1.63
LIM2P55344 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms