Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 AL683826.1-201ENST00000624104 627 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 A2ML1-205ENST00000539547 3460 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 CFAP47-201ENST00000297866 3608 ntTSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 AC087203.2-201ENST00000526502 1587 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 AC108467.2-201ENST00000617640 1597 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 AC093768.1-201ENST00000505987 2173 ntBASIC6.55□□□□□ -1.36
COL8A1P27658 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 LY75-CD302-202ENST00000505052 5482 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
COL8A1P27658 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 WBP2NL-201ENST00000328823 2255 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL8A1P27658 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
COL8A1P27658 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 GPM6A-202ENST00000393658 2821 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 GULP1-203ENST00000409609 1932 ntAPPRIS P3 TSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 AC217777.1-201ENST00000570034 1471 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 AMPD3-202ENST00000396553 3680 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 ANKS1B-220ENST00000550693 3372 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 RRN3-203ENST00000429751 2198 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 AL590065.1-201ENST00000603371 4774 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 GUCY2F-201ENST00000218006 3714 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 AL589642.1-201ENST00000430787 2582 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 GPM6B-205ENST00000454189 3957 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL8A1P27658 Y_RNA.97-201ENST00000363094 102 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 RN7SKP15-201ENST00000364742 309 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 RNU12-2P-201ENST00000364789 156 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL8A1P27658 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL8A1P27658 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 H2AFZP3-201ENST00000394213 387 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 SNORA2C-201ENST00000408564 137 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC006455.4-201ENST00000418297 528 ntTSL 4 BASIC6.54□□□□□ -1.36
COL8A1P27658 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 SEPT7P5-201ENST00000434048 306 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 RPL23AP50-201ENST00000434149 455 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 RPS10P18-201ENST00000442662 495 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC073188.4-201ENST00000450077 528 ntTSL 4 BASIC6.54□□□□□ -1.36
COL8A1P27658 AL034369.1-201ENST00000453808 477 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 AC233724.10-201ENST00000510454 409 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 KCTD9P2-201ENST00000512203 1013 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 RN7SKP31-201ENST00000516354 278 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 AP003084.1-201ENST00000524828 742 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC023050.3-201ENST00000541142 333 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.54□□□□□ -1.36
COL8A1P27658 SNRPGP18-201ENST00000553000 214 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 FRG2DP-202ENST00000566967 323 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 KPNA2P3-201ENST00000584190 848 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC010980.1-204ENST00000589724 585 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC6.54□□□□□ -1.36
COL8A1P27658 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 DISC2.1-201ENST00000612827 205 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 pRNA.12-201ENST00000614353 90 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 pRNA.3-201ENST00000615048 90 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 MIR6071-201ENST00000616741 78 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AC129908.1-201ENST00000624553 648 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 MIR665-201ENST00000635949 72 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 AC087501.5-201ENST00000607496 2374 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 AC110998.1-201ENST00000519029 2053 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 SND1-IT1-201ENST00000623342 2481 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 COLGALT2-202ENST00000367520 2325 ntTSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 RPL12P38-202ENST00000588627 2319 ntBASIC6.54□□□□□ -1.36
COL8A1P27658 AOAH-208ENST00000612871 2336 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
COL8A1P27658 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL8A1P27658 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL8A1P27658 TMC1-202ENST00000340019 3068 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL8A1P27658 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC6.53□□□□□ -1.36
COL8A1P27658 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC6.53□□□□□ -1.36
COL8A1P27658 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms