Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 AC083843.2-201ENST00000568248 6253 ntBASIC4.87□□□□□ -1.63
SDC1P18827 RNA5SP242-201ENST00000364171 118 ntBASIC4.87□□□□□ -1.63
SDC1P18827 RNA5SP132-201ENST00000364725 118 ntBASIC4.87□□□□□ -1.63
SDC1P18827 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 SNORA2.3-201ENST00000383920 135 ntBASIC4.87□□□□□ -1.63
SDC1P18827 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 AL356968.2-201ENST00000412769 1257 ntBASIC4.87□□□□□ -1.63
SDC1P18827 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 AC108075.1-201ENST00000424692 529 ntBASIC4.87□□□□□ -1.63
SDC1P18827 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 GAPDHP34-201ENST00000432112 823 ntBASIC4.87□□□□□ -1.63
SDC1P18827 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 AC012512.1-201ENST00000446594 718 ntBASIC4.87□□□□□ -1.63
SDC1P18827 BTF3P6-201ENST00000448054 499 ntBASIC4.87□□□□□ -1.63
SDC1P18827 MTND6P5-201ENST00000448266 512 ntBASIC4.87□□□□□ -1.63
SDC1P18827 AC144530.1-201ENST00000452862 555 ntBASIC4.87□□□□□ -1.63
SDC1P18827 SIAH1P1-201ENST00000479411 923 ntBASIC4.87□□□□□ -1.63
SDC1P18827 SUMO2P4-201ENST00000504193 276 ntBASIC4.87□□□□□ -1.63
SDC1P18827 UGT2A3P7-201ENST00000510485 734 ntBASIC4.87□□□□□ -1.63
SDC1P18827 RNA5SP362-201ENST00000516048 118 ntBASIC4.87□□□□□ -1.63
SDC1P18827 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 AC134349.2-201ENST00000535136 910 ntBASIC4.87□□□□□ -1.63
SDC1P18827 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.87□□□□□ -1.63
SDC1P18827 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.87□□□□□ -1.63
SDC1P18827 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.87□□□□□ -1.63
SDC1P18827 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SDC1P18827 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SDC1P18827 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.87□□□□□ -1.63
SDC1P18827 PROS2P-201ENST00000474651 1951 ntBASIC4.87□□□□□ -1.63
SDC1P18827 OR9K1P-202ENST00000641111 3217 ntBASIC4.87□□□□□ -1.63
SDC1P18827 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SDC1P18827 CR382285.2-201ENST00000624662 1495 ntBASIC4.87□□□□□ -1.63
SDC1P18827 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
SDC1P18827 AC011447.7-201ENST00000624228 1590 ntBASIC4.87□□□□□ -1.63
SDC1P18827 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SDC1P18827 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.86□□□□□ -1.63
SDC1P18827 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SDC1P18827 U3.2-201ENST00000362981 210 ntBASIC4.86□□□□□ -1.63
SDC1P18827 RNU6-1331P-201ENST00000363658 106 ntBASIC4.86□□□□□ -1.63
SDC1P18827 RN7SKP15-201ENST00000364742 309 ntBASIC4.86□□□□□ -1.63
SDC1P18827 CTSL3P-202ENST00000412179 788 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 AC096644.3-201ENST00000416788 338 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AL513325.1-201ENST00000417716 1034 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AC013429.2-201ENST00000418798 781 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.86□□□□□ -1.63
SDC1P18827 HMGB1P32-201ENST00000425971 565 ntBASIC4.86□□□□□ -1.63
SDC1P18827 RPL7L1P9-201ENST00000431298 745 ntBASIC4.86□□□□□ -1.63
SDC1P18827 RAB9AP5-201ENST00000437794 597 ntBASIC4.86□□□□□ -1.63
SDC1P18827 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 RAB9AP2-201ENST00000443911 597 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 OR52E7P-201ENST00000452394 933 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 RN7SL441P-201ENST00000492388 296 ntBASIC4.86□□□□□ -1.63
SDC1P18827 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.86□□□□□ -1.63
SDC1P18827 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC4.86□□□□□ -1.63
SDC1P18827 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 AL512310.9-201ENST00000553311 948 ntBASIC4.86□□□□□ -1.63
SDC1P18827 NDUFB4P11-201ENST00000560510 395 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AGGF1P9-201ENST00000561884 913 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.86□□□□□ -1.63
SDC1P18827 AC079395.2-201ENST00000610982 737 ntBASIC4.86□□□□□ -1.63
SDC1P18827 AL391597.1-201ENST00000618707 694 ntBASIC4.86□□□□□ -1.63
SDC1P18827 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 OR8A1-204ENST00000642111 1145 ntBASIC4.86□□□□□ -1.63
SDC1P18827 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.86□□□□□ -1.63
SDC1P18827 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SDC1P18827 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SDC1P18827 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
SDC1P18827 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms