Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
CUX2O14529 RNU1-94P-201ENST00000362627 173 ntBASIC8.76□□□□□ -1.01
CUX2O14529 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC8.76□□□□□ -1.01
CUX2O14529 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC8.76□□□□□ -1.01
CUX2O14529 RPEP3-201ENST00000425462 676 ntBASIC8.76□□□□□ -1.01
CUX2O14529 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC8.76□□□□□ -1.01
CUX2O14529 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC8.76□□□□□ -1.01
CUX2O14529 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC8.76□□□□□ -1.01
CUX2O14529 PHBP16-201ENST00000446318 950 ntBASIC8.76□□□□□ -1.01
CUX2O14529 AL354714.3-201ENST00000447284 493 ntBASIC8.76□□□□□ -1.01
CUX2O14529 AC079168.1-201ENST00000458741 345 ntBASIC8.76□□□□□ -1.01
CUX2O14529 SNORD125-201ENST00000459538 96 ntBASIC8.76□□□□□ -1.01
CUX2O14529 RN7SL244P-201ENST00000493405 297 ntBASIC8.76□□□□□ -1.01
CUX2O14529 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC8.76□□□□□ -1.01
CUX2O14529 OR4A17P-201ENST00000526032 904 ntBASIC8.76□□□□□ -1.01
CUX2O14529 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC8.76□□□□□ -1.01
CUX2O14529 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC8.76□□□□□ -1.01
CUX2O14529 AC020910.3-201ENST00000603701 874 ntBASIC8.76□□□□□ -1.01
CUX2O14529 AL353729.2-201ENST00000605859 1249 ntBASIC8.76□□□□□ -1.01
CUX2O14529 AC090948.2-201ENST00000607363 564 ntBASIC8.76□□□□□ -1.01
CUX2O14529 RNA5SP196-201ENST00000625967 102 ntBASIC8.76□□□□□ -1.01
CUX2O14529 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
CUX2O14529 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC8.76□□□□□ -1.01
CUX2O14529 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC8.76□□□□□ -1.01
CUX2O14529 UGT2B24P-201ENST00000514441 1597 ntBASIC8.75□□□□□ -1.01
CUX2O14529 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC8.75□□□□□ -1.01
CUX2O14529 AL355834.1-201ENST00000556602 3965 ntBASIC8.75□□□□□ -1.01
CUX2O14529 AC093671.1-201ENST00000624981 2929 ntBASIC8.75□□□□□ -1.01
CUX2O14529 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
CUX2O14529 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX2O14529 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
CUX2O14529 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX2O14529 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX2O14529 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC8.75□□□□□ -1.01
CUX2O14529 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC8.75□□□□□ -1.01
CUX2O14529 CYCSP34-201ENST00000458172 304 ntBASIC8.75□□□□□ -1.01
CUX2O14529 AC108751.3-201ENST00000461814 1020 ntBASIC8.75□□□□□ -1.01
CUX2O14529 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC8.75□□□□□ -1.01
CUX2O14529 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX2O14529 MIR3138-201ENST00000585238 82 ntBASIC8.75□□□□□ -1.01
CUX2O14529 AC023043.4-201ENST00000612081 449 ntBASIC8.75□□□□□ -1.01
CUX2O14529 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC8.75□□□□□ -1.01
CUX2O14529 MIR6853-201ENST00000619642 74 ntBASIC8.75□□□□□ -1.01
CUX2O14529 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX2O14529 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
CUX2O14529 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC8.75□□□□□ -1.01
CUX2O14529 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.01
CUX2O14529 ALB-220ENST00000621628 1606 ntTSL 5 BASIC8.74□□□□□ -1.01
CUX2O14529 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX2O14529 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX2O14529 AC010168.2-201ENST00000562691 5428 ntBASIC8.74□□□□□ -1.01
CUX2O14529 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX2O14529 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX2O14529 OR4K17-201ENST00000315543 1032 ntBASIC8.74□□□□□ -1.01
CUX2O14529 DNAJA1P3-201ENST00000399417 1194 ntBASIC8.74□□□□□ -1.01
CUX2O14529 RSU1P3-201ENST00000412878 835 ntBASIC8.74□□□□□ -1.01
CUX2O14529 OR13Z1P-201ENST00000416141 834 ntBASIC8.74□□□□□ -1.01
CUX2O14529 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC8.74□□□□□ -1.01
CUX2O14529 OR4C10P-201ENST00000434991 931 ntBASIC8.74□□□□□ -1.01
CUX2O14529 RN7SL443P-201ENST00000464331 290 ntBASIC8.74□□□□□ -1.01
CUX2O14529 AC026726.1-201ENST00000512859 601 ntBASIC8.74□□□□□ -1.01
CUX2O14529 MIR3124-201ENST00000582636 67 ntBASIC8.74□□□□□ -1.01
CUX2O14529 IGKV1OR2-9-201ENST00000603957 287 ntBASIC8.74□□□□□ -1.01
CUX2O14529 IGKV1OR2-11-201ENST00000604120 287 ntBASIC8.74□□□□□ -1.01
CUX2O14529 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC8.74□□□□□ -1.01
CUX2O14529 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.01
CUX2O14529 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC8.74□□□□□ -1.01
CUX2O14529 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC8.74□□□□□ -1.01
CUX2O14529 AC106871.1-201ENST00000568324 3102 ntBASIC8.74□□□□□ -1.01
CUX2O14529 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC8.73□□□□□ -1.01
CUX2O14529 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 MIR483-201ENST00000385070 76 ntBASIC8.73□□□□□ -1.01
CUX2O14529 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC8.73□□□□□ -1.01
CUX2O14529 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC8.73□□□□□ -1.01
CUX2O14529 RN7SKP67-201ENST00000515905 235 ntBASIC8.73□□□□□ -1.01
CUX2O14529 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC8.73□□□□□ -1.01
CUX2O14529 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC8.73□□□□□ -1.01
CUX2O14529 AC073869.8-201ENST00000641806 335 ntBASIC8.73□□□□□ -1.01
CUX2O14529 AC068446.1-201ENST00000556425 1549 ntBASIC8.73□□□□□ -1.01
CUX2O14529 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC8.73□□□□□ -1.01
CUX2O14529 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC8.73□□□□□ -1.01
CUX2O14529 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 ACTR3BP5-201ENST00000448440 1479 ntBASIC8.73□□□□□ -1.01
CUX2O14529 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC8.73□□□□□ -1.01
CUX2O14529 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.01
CUX2O14529 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC8.73□□□□□ -1.01
CUX2O14529 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
CUX2O14529 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC8.72□□□□□ -1.01
CUX2O14529 RNA5SP372-201ENST00000390836 115 ntBASIC8.72□□□□□ -1.01
CUX2O14529 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC8.72□□□□□ -1.01
CUX2O14529 RN7SL188P-201ENST00000469842 285 ntBASIC8.72□□□□□ -1.01
CUX2O14529 RN7SL319P-201ENST00000480656 221 ntBASIC8.72□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms