Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC005005.4-201ENST00000623789 16698 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 TRIM51GP-201ENST00000534741 1350 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 MIR133B-201ENST00000362210 119 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 SNORD1C-201ENST00000363315 78 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 DHFRP5-201ENST00000406944 564 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 RNA5SP296-201ENST00000410523 111 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC046176.1-201ENST00000435260 1170 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC073648.4-201ENST00000442655 781 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC092106.1-201ENST00000444291 373 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 VN1R48P-201ENST00000448149 1036 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 RPL7P6-201ENST00000480903 738 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC018442.3-201ENST00000523025 183 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 OR8X1P-201ENST00000534542 869 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC011840.5-201ENST00000582125 771 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 BMS1P7-201ENST00000602440 1052 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001005.3-201ENST00000622049 129 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC01739-205ENST00000641890 573 ntBASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.34□□□□□ -1.55
PCDHGA1Q9Y5H4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHGA1Q9Y5H4 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PCDHGA1Q9Y5H4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.56
PCDHGA1Q9Y5H4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
PCDHGA1Q9Y5H4 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 SPATA2P1-201ENST00000431223 2055 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AL034403.1-201ENST00000399414 885 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AL136131.1-201ENST00000406079 803 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC093162.1-201ENST00000419682 124 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 OR6K4P-201ENST00000423179 955 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AL365220.1-201ENST00000432923 399 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 NPM1P39-201ENST00000449818 867 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 OSTCP1-201ENST00000455507 450 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 LARP7P4-201ENST00000481075 878 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 DUTP1-201ENST00000493631 470 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC013701.1-201ENST00000522657 465 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC244502.2-201ENST00000543361 851 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC245128.3-201ENST00000594721 748 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AP001267.4-201ENST00000602598 545 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC069307.1-201ENST00000602820 447 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 HMGB1P51-201ENST00000605166 638 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC090527.3-201ENST00000619041 548 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC092159.4-201ENST00000624944 550 ntBASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PCDHGA1Q9Y5H4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms