Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AL157385.1-201ENST00000446973 268 ntBASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AC011005.3-201ENST00000491624 395 ntBASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 FCF1-203ENST00000553615 954 ntTSL 3 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 PDCD6IPP2-207ENST00000566321 1069 ntBASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AL162431.4-201ENST00000604674 411 ntBASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 LARS-201ENST00000274562 2213 ntTSL 2 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 MIR600-201ENST00000385007 98 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 ELOCP19-201ENST00000411919 318 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 UBE2V2P3-201ENST00000433562 437 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 NOP56P2-201ENST00000447491 769 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC093824.1-201ENST00000508796 343 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC090220.1-201ENST00000593078 1699 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 MIR23A-201ENST00000385245 73 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 MTND4LP21-201ENST00000415303 295 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 snoU13.29-201ENST00000459370 104 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC063943.1-201ENST00000465434 453 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 IGBP1P4-201ENST00000503202 879 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 GAPDHP56-201ENST00000506031 988 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 COX6B1P5-201ENST00000509843 249 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 RNU6-943P-201ENST00000516960 98 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 OR5D2P-201ENST00000524390 911 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC130364.2-201ENST00000528639 604 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 GCSHP4-201ENST00000538792 439 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AP005432.2-201ENST00000608162 586 ntBASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC9.85□□□□□ -0.83
SHROOM4Q9ULL8 AC239868.2-201ENST00000564237 4527 ntBASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 NDUFB4P8-201ENST00000435351 367 ntBASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 TRBV8-1-201ENST00000481590 279 ntBASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AC005252.1-201ENST00000604518 1063 ntBASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AP003400.3-201ENST00000624904 346 ntBASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 AC063952.1-203ENST00000634410 658 ntBASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 FTO-223ENST00000640179 210 ntTSL 5 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 STK3-216ENST00000523601 3107 ntTSL 2 BASIC9.84□□□□□ -0.83
SHROOM4Q9ULL8 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 FAM3C2-201ENST00000312214 681 ntBASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 HMGN1P9-201ENST00000515212 298 ntBASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 OR7E128P-201ENST00000532736 1024 ntBASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 OR4A6P-201ENST00000534364 970 ntBASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
SHROOM4Q9ULL8 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC9.82□□□□□ -0.84
SHROOM4Q9ULL8 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC9.82□□□□□ -0.84
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms