Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL121878.1-201ENST00000418638 859 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 GLUD1P9-201ENST00000420997 1173 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 MTND4P24-201ENST00000424002 397 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 NAP1L4P2-201ENST00000425958 899 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 MTND2P21-201ENST00000436242 1042 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 SNRPFP2-201ENST00000440710 251 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AL391987.1-201ENST00000441025 200 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 YWHAEP1-201ENST00000453697 763 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC104629.2-201ENST00000468627 598 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC012146.2-201ENST00000576545 416 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 MIR3614-201ENST00000581261 86 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC098483.2-201ENST00000603158 454 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC025574.2-201ENST00000615621 514 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AP005431.1-201ENST00000618479 319 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 REV3L-214ENST00000619481 969 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 AC127024.6-201ENST00000621598 424 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 SNORA17.5-201ENST00000630429 132 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 SMG1P7-201ENST00000565246 2704 ntBASIC4.74□□□□□ -1.65
NKX3-1Q99801 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
NKX3-1Q99801 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
NKX3-1Q99801 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC002525.1-201ENST00000624392 1622 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 RNU6-1251P-201ENST00000364502 107 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 SNORA16A-201ENST00000384342 137 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 PTGES3P2-201ENST00000407942 482 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 RNU2-22P-201ENST00000411266 212 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC104843.2-201ENST00000427666 297 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 RPS26P4-201ENST00000431743 355 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC007563.3-201ENST00000433233 371 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 RPL23AP19-201ENST00000436229 369 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 AL161636.2-201ENST00000445179 927 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 OR2AF1P-201ENST00000454899 889 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 RN7SL174P-201ENST00000475578 289 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 PPIAP19-201ENST00000486414 492 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 IGKV3D-34-201ENST00000522638 302 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 MRPS16P1-201ENST00000523462 412 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 OR4A46P-201ENST00000527255 933 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 OR11H3P-201ENST00000554547 982 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC135068.5-201ENST00000624197 983 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 160.1 ms