Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC018765.1-201ENST00000623357 3446 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC233968.1-201ENST00000611212 1300 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC000111.2-201ENST00000448200 210 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 AC023043.4-201ENST00000612081 449 ntBASIC4.77□□□□□ -1.65
VPS13AQ96RL7 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
VPS13AQ96RL7 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 SNORA63.1-201ENST00000362493 131 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 RNU1-94P-201ENST00000362627 173 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 YME1L1P1-201ENST00000429435 297 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AC023818.1-201ENST00000498379 384 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AL133338.2-201ENST00000604292 736 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 HSPD1P8-201ENST00000400121 1658 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 TLK1P1-201ENST00000456760 2440 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 SNORA73.1-201ENST00000363107 205 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 SNORD1C-201ENST00000363315 78 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 RPS26P8-201ENST00000393490 348 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AL136116.2-201ENST00000404020 785 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 GLUD1P3-202ENST00000508551 200 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AC100847.1-201ENST00000611316 481 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 AC140479.2-201ENST00000421567 3130 ntBASIC4.76□□□□□ -1.65
VPS13AQ96RL7 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS13AQ96RL7 OR8G1-202ENST00000641972 5055 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 RPL23AP59-201ENST00000399415 461 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC093578.1-201ENST00000415219 368 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 GLUD1P9-201ENST00000420997 1173 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL117339.2-201ENST00000430475 180 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL132765.1-201ENST00000434165 553 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 MAPK10-304ENST00000641341 3984 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 RPL11P3-201ENST00000395256 523 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ATP5HP3-201ENST00000396994 486 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC091564.1-201ENST00000464563 479 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 RN7SL703P-201ENST00000578485 302 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 MIR8059-201ENST00000620427 81 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL023881.1-201ENST00000621088 301 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 MBTD1-203ENST00000415868 5099 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AC079097.1-201ENST00000512187 1399 ntBASIC4.75□□□□□ -1.65
VPS13AQ96RL7 AL592148.3-201ENST00000608771 2646 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms