Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC5.59□□□□□ -1.52
CCDC140Q96MF4 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AL358913.2-201ENST00000553881 1548 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AP002907.1-201ENST00000606361 1430 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC123769.2-201ENST00000624332 5984 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 HDAC1P2-201ENST00000453661 1398 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 Y_RNA.256-201ENST00000364594 104 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 Y_RNA.372-201ENST00000365599 102 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC090114.1-201ENST00000393266 448 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AL590002.1-201ENST00000406554 418 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 CCDC58P2-201ENST00000417131 366 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 GSTA6P-201ENST00000424144 582 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 VDAC2P3-201ENST00000430995 828 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AL662791.1-201ENST00000441992 928 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 MTATP6P30-201ENST00000443540 664 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 PSPHP1-201ENST00000450062 261 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 HMGB1P7-201ENST00000450921 612 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AL354710.1-201ENST00000453641 246 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AL645937.3-201ENST00000453647 936 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 BTF3P5-201ENST00000457252 467 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 RNU7-136P-201ENST00000458819 69 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC079193.1-201ENST00000460497 588 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 RN7SL160P-201ENST00000468558 284 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 RN7SL145P-201ENST00000469955 296 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC018475.1-201ENST00000478358 465 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 RN7SL775P-201ENST00000498361 336 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 FAM92A1P2-202ENST00000504766 877 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC091133.4-201ENST00000511142 308 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LINC01085-203ENST00000511195 326 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC108064.1-201ENST00000513791 460 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 OR5M2P-201ENST00000529003 936 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 GLYATL1P4-201ENST00000529326 906 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 OR4A12P-201ENST00000530847 918 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 SULT1C2P1-202ENST00000562418 459 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 ZNF322P1-201ENST00000568013 1209 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 MIR5186-201ENST00000577504 120 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AP002360.3-201ENST00000607673 710 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC015712.7-201ENST00000615211 635 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC104010.1-201ENST00000616889 150 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC009704.2-201ENST00000618739 483 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 uc_338.37-201ENST00000620113 186 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC068880.5-201ENST00000624331 290 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC183089.2-201ENST00000637931 916 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AP000842.4-201ENST00000638781 748 ntBASIC5.58□□□□□ -1.52
CCDC140Q96MF4 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC140Q96MF4 SPATA31C2-201ENST00000324915 3777 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms