Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RNU6-1257P-201ENST00000384625 110 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 NPM1P40-201ENST00000412758 733 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 TRIM60P17-201ENST00000415181 719 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 MTND4LP13-201ENST00000425022 298 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 MORF4L1P7-201ENST00000426038 703 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC009784.1-201ENST00000426484 460 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 HSPE1P16-201ENST00000426640 348 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 ARL5AP3-201ENST00000439327 386 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 NXT1P1-201ENST00000458481 316 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 ACA64.1-201ENST00000459171 127 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 RPS23P6-201ENST00000466136 431 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 OR9N1P-202ENST00000494289 481 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 NENFP3-201ENST00000503735 313 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC138409.2-202ENST00000507274 458 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 TRIM77BP-201ENST00000524985 1119 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 UBTFL9-201ENST00000534504 1148 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC092121.1-201ENST00000569452 202 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 MIR4311-201ENST00000580794 100 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC023762.1-201ENST00000603280 584 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AP000864.1-201ENST00000609424 650 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AL162574.1-201ENST00000615702 950 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC140725.3-201ENST00000616193 880 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC068787.1-201ENST00000623908 691 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AC011755.1-201ENST00000623763 2049 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 CNOT6LP1-201ENST00000559681 1462 ntBASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CLIP4Q8N3C7 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 RN7SKP275-201ENST00000364626 301 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 U3.28-201ENST00000391249 210 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 OR7E101P-201ENST00000400428 513 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC211486.3-201ENST00000412694 621 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC245060.4-201ENST00000413293 1121 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC017078.1-201ENST00000416146 368 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AL022331.1-201ENST00000429025 477 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 TPTE2P3-201ENST00000441562 1189 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 HLA-DPA3-207ENST00000454398 229 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 RPS4XP12-201ENST00000461747 709 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 RN7SL168P-201ENST00000463821 279 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC022215.1-201ENST00000481770 362 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 ATP5LP5-201ENST00000483050 299 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 RPS3AP6-201ENST00000484430 795 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 RPS26P24-201ENST00000497656 331 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC006499.4-201ENST00000510947 694 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 MTND2P32-201ENST00000521584 1038 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 AC104115.2-201ENST00000523026 687 ntBASIC5.16□□□□□ -1.58
CLIP4Q8N3C7 SOX5P1-201ENST00000524155 1127 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms