Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 SNORA17.1-201ENST00000362945 126 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 RNU1-106P-201ENST00000384382 164 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 RNA5SP187-201ENST00000384400 119 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC007068.1-201ENST00000396690 844 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 U3.36-201ENST00000408418 213 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 NPM1P26-201ENST00000426339 738 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 RPL7P56-201ENST00000429441 717 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 VN1R54P-201ENST00000435210 1049 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 TXNP2-201ENST00000443918 295 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC073850.1-201ENST00000449243 255 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 AZGP1P2-201ENST00000454506 345 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC109464.1-201ENST00000511091 819 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 RNU6-467P-201ENST00000517027 110 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AP004607.2-201ENST00000533949 322 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 NMNAT1P5-201ENST00000559657 841 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 MTND2P13-201ENST00000577438 1039 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 MIR4700-201ENST00000578311 74 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 MIR4646-201ENST00000580775 63 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 LINC00216-201ENST00000623548 1126 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 AP002799.1-201ENST00000623552 423 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP41Q3LFD5 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP41Q3LFD5 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC131971.1-201ENST00000332881 1482 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.76□□□□□ -1.49
USP41Q3LFD5 AC024341.1-201ENST00000526444 1552 ntBASIC5.76□□□□□ -1.49
USP41Q3LFD5 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP41Q3LFD5 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AL589647.1-201ENST00000402485 466 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 OR4K12P-201ENST00000406538 961 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AL390879.2-203ENST00000426943 1121 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 EIF2S2P3-201ENST00000428356 999 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC138761.5-201ENST00000433967 325 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AL590762.3-201ENST00000436372 640 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 CYCSP53-201ENST00000455540 265 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 RN7SL188P-201ENST00000469842 285 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 RPS17P5-201ENST00000498293 408 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 RPS4XP20-201ENST00000505751 772 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 RN7SKP66-201ENST00000516681 231 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 OR10D4P-201ENST00000525892 951 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 MIR4660-201ENST00000583549 74 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC005014.3-201ENST00000605985 190 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC015712.7-201ENST00000615211 635 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC241377.1-201ENST00000619797 406 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC106730.3-201ENST00000624568 641 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC125336.1-201ENST00000508893 2827 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC005261.6-201ENST00000623072 1387 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 AC092376.2-201ENST00000622621 4116 ntBASIC5.75□□□□□ -1.49
USP41Q3LFD5 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP41Q3LFD5 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.75□□□□□ -1.49
USP41Q3LFD5 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
USP41Q3LFD5 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
USP41Q3LFD5 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms