Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 AC106730.2-201ENST00000566641 540 ntBASIC5□□□□□ -1.61
SOX3P41225 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
SOX3P41225 AC016839.1-201ENST00000578162 867 ntBASIC5□□□□□ -1.61
SOX3P41225 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5□□□□□ -1.61
SOX3P41225 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 IGLCOR22-2-201ENST00000605398 313 ntBASIC5□□□□□ -1.61
SOX3P41225 AL512329.2-201ENST00000607350 548 ntBASIC5□□□□□ -1.61
SOX3P41225 AC241377.1-201ENST00000619797 406 ntBASIC5□□□□□ -1.61
SOX3P41225 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5□□□□□ -1.61
SOX3P41225 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5□□□□□ -1.61
SOX3P41225 AC011755.1-201ENST00000623763 2049 ntBASIC5□□□□□ -1.61
SOX3P41225 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 AL031595.2-201ENST00000624215 19071 ntBASIC5□□□□□ -1.61
SOX3P41225 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5□□□□□ -1.61
SOX3P41225 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 PABPC1P6-201ENST00000445594 1829 ntBASIC5□□□□□ -1.61
SOX3P41225 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SOX3P41225 AL138820.1-201ENST00000617901 5305 ntBASIC4.99□□□□□ -1.61
SOX3P41225 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SOX3P41225 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX3P41225 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.99□□□□□ -1.61
SOX3P41225 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 SNORD56.6-201ENST00000384569 71 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC017078.1-201ENST00000416146 368 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX3P41225 FAM96AP1-201ENST00000430879 482 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 RAB9AP5-201ENST00000437794 597 ntBASIC4.99□□□□□ -1.61
SOX3P41225 RAB9AP2-201ENST00000443911 597 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AL163193.1-201ENST00000444895 788 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX3P41225 NPM1P19-201ENST00000450070 712 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX3P41225 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 COX6B1P2-201ENST00000489624 230 ntBASIC4.99□□□□□ -1.61
SOX3P41225 PANCR-201ENST00000503456 493 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX3P41225 PGAM1P13-201ENST00000507497 754 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 AP004607.2-201ENST00000533949 322 ntBASIC4.99□□□□□ -1.61
SOX3P41225 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SOX3P41225 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SOX3P41225 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX3P41225 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.99□□□□□ -1.61
SOX3P41225 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX3P41225 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.99□□□□□ -1.61
SOX3P41225 AP000769.2-201ENST00000602344 396 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC108738.1-201ENST00000603703 237 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC4.99□□□□□ -1.61
SOX3P41225 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 AC109583.2-201ENST00000617367 129 ntBASIC4.99□□□□□ -1.61
SOX3P41225 WBP1LP8-201ENST00000617401 327 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AL163152.1-201ENST00000642001 374 ntBASIC4.99□□□□□ -1.61
SOX3P41225 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SOX3P41225 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.99□□□□□ -1.61
SOX3P41225 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.98□□□□□ -1.61
SOX3P41225 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.98□□□□□ -1.61
SOX3P41225 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SOX3P41225 RNU6-618P-201ENST00000363518 112 ntBASIC4.98□□□□□ -1.61
SOX3P41225 PPIAP9-201ENST00000403866 498 ntBASIC4.98□□□□□ -1.61
SOX3P41225 OR4K12P-201ENST00000406538 961 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.98□□□□□ -1.61
SOX3P41225 VN1R31P-201ENST00000417498 730 ntBASIC4.98□□□□□ -1.61
SOX3P41225 DPPA2P2-201ENST00000418220 897 ntBASIC4.98□□□□□ -1.61
SOX3P41225 SLC35E1P1-201ENST00000419313 864 ntBASIC4.98□□□□□ -1.61
SOX3P41225 MTND2P11-201ENST00000423638 648 ntBASIC4.98□□□□□ -1.61
SOX3P41225 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.98□□□□□ -1.61
SOX3P41225 AC012497.1-201ENST00000429392 575 ntBASIC4.98□□□□□ -1.61
SOX3P41225 RPL12P17-201ENST00000432393 498 ntBASIC4.98□□□□□ -1.61
SOX3P41225 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.98□□□□□ -1.61
SOX3P41225 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.98□□□□□ -1.61
SOX3P41225 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.98□□□□□ -1.61
SOX3P41225 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.98□□□□□ -1.61
SOX3P41225 AC245028.2-201ENST00000458673 253 ntBASIC4.98□□□□□ -1.61
SOX3P41225 AC092754.1-201ENST00000472975 479 ntBASIC4.98□□□□□ -1.61
SOX3P41225 RN7SL30P-201ENST00000488416 306 ntBASIC4.98□□□□□ -1.61
SOX3P41225 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.98□□□□□ -1.61
SOX3P41225 ENPP7P11-201ENST00000505915 627 ntBASIC4.98□□□□□ -1.61
SOX3P41225 HIGD1AP14-201ENST00000507617 282 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms