Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC008782.1-201ENST00000603386 430 ntBASIC8.3□□□□□ -1.08
CUX1P39880 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC8.3□□□□□ -1.08
CUX1P39880 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
CUX1P39880 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
CUX1P39880 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
CUX1P39880 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
CUX1P39880 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC8.29□□□□□ -1.08
CUX1P39880 AC046176.1-201ENST00000435260 1170 ntBASIC8.29□□□□□ -1.08
CUX1P39880 CDV3-208ENST00000511392 554 ntTSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 IGKV2D-10-201ENST00000520194 281 ntBASIC8.29□□□□□ -1.08
CUX1P39880 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC8.29□□□□□ -1.08
CUX1P39880 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CUX1P39880 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
CUX1P39880 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
CUX1P39880 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC8.29□□□□□ -1.08
CUX1P39880 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 OFD1P8Y-201ENST00000449148 1433 ntBASIC8.29□□□□□ -1.08
CUX1P39880 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
CUX1P39880 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 AC092681.1-201ENST00000297369 291 ntBASIC8.29□□□□□ -1.08
CUX1P39880 AL357515.1-201ENST00000402967 542 ntBASIC8.29□□□□□ -1.08
CUX1P39880 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
CUX1P39880 ATG4AP1-201ENST00000416893 538 ntBASIC8.29□□□□□ -1.08
CUX1P39880 AC016831.4-201ENST00000438302 307 ntBASIC8.29□□□□□ -1.08
CUX1P39880 AL450023.3-201ENST00000440592 271 ntBASIC8.29□□□□□ -1.08
CUX1P39880 AC016772.1-201ENST00000444170 1261 ntBASIC8.29□□□□□ -1.08
CUX1P39880 OR4A6P-201ENST00000534364 970 ntBASIC8.29□□□□□ -1.08
CUX1P39880 AL356218.2-201ENST00000605264 187 ntBASIC8.29□□□□□ -1.08
CUX1P39880 MIR6830-201ENST00000636015 70 ntBASIC8.29□□□□□ -1.08
CUX1P39880 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CUX1P39880 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC8.28□□□□□ -1.08
CUX1P39880 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
CUX1P39880 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
CUX1P39880 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
CUX1P39880 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC8.28□□□□□ -1.08
CUX1P39880 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
CUX1P39880 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
CUX1P39880 OR56B2P-202ENST00000641377 2453 ntBASIC8.28□□□□□ -1.08
CUX1P39880 AC023141.6-201ENST00000429418 337 ntBASIC8.28□□□□□ -1.08
CUX1P39880 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC8.28□□□□□ -1.08
CUX1P39880 RPS5P7-201ENST00000456664 608 ntBASIC8.28□□□□□ -1.08
CUX1P39880 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC8.28□□□□□ -1.08
CUX1P39880 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC8.28□□□□□ -1.08
CUX1P39880 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC8.28□□□□□ -1.08
CUX1P39880 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC8.28□□□□□ -1.08
CUX1P39880 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC8.28□□□□□ -1.08
CUX1P39880 IGKV1OR2-9-201ENST00000603957 287 ntBASIC8.28□□□□□ -1.08
CUX1P39880 IGKV1OR2-11-201ENST00000604120 287 ntBASIC8.28□□□□□ -1.08
CUX1P39880 AL109618.2-201ENST00000605527 211 ntBASIC8.28□□□□□ -1.08
CUX1P39880 AC010424.2-201ENST00000607594 443 ntBASIC8.28□□□□□ -1.08
CUX1P39880 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CUX1P39880 AC019206.1-201ENST00000621938 425 ntBASIC8.28□□□□□ -1.08
CUX1P39880 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC8.28□□□□□ -1.08
CUX1P39880 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC8.28□□□□□ -1.08
CUX1P39880 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
CUX1P39880 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC8.28□□□□□ -1.08
CUX1P39880 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
CUX1P39880 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
CUX1P39880 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
CUX1P39880 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC8.27□□□□□ -1.08
CUX1P39880 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
CUX1P39880 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC8.27□□□□□ -1.09
CUX1P39880 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 RPL7AP52-201ENST00000458096 790 ntBASIC8.27□□□□□ -1.09
CUX1P39880 snoU13.29-201ENST00000459370 104 ntBASIC8.27□□□□□ -1.09
CUX1P39880 AC104971.1-201ENST00000495117 578 ntBASIC8.27□□□□□ -1.09
CUX1P39880 AC026402.1-201ENST00000513642 170 ntBASIC8.27□□□□□ -1.09
CUX1P39880 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC8.27□□□□□ -1.09
CUX1P39880 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 AC007497.1-201ENST00000610421 561 ntBASIC8.27□□□□□ -1.09
CUX1P39880 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
CUX1P39880 AP000547.3-204ENST00000588548 2523 ntBASIC8.27□□□□□ -1.09
CUX1P39880 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
CUX1P39880 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC8.26□□□□□ -1.09
CUX1P39880 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
CUX1P39880 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC8.26□□□□□ -1.09
CUX1P39880 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
CUX1P39880 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
CUX1P39880 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
CUX1P39880 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 147.3 ms