Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RNU1-106P-201ENST00000384382 164 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 RPL5P19-201ENST00000404228 893 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 MORF4L1P4-201ENST00000450245 976 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 HMGB1P40-201ENST00000525121 540 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC090424.1-201ENST00000535243 736 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AGGF1P7-201ENST00000562369 913 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 OR1F2P-201ENST00000570470 933 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 MIR4436B2-201ENST00000581415 91 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 MIR4436B1-201ENST00000583272 91 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC006115.2-201ENST00000596823 202 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC084036.1-201ENST00000609190 508 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 UGT2B26P-201ENST00000508672 1613 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 AC109446.4-201ENST00000623235 2755 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC011493.1-201ENST00000596753 1632 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 U3.36-201ENST00000408418 213 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 BTF3P9-201ENST00000418784 283 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 RPS26P13-201ENST00000419030 330 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 MTCYBP7-201ENST00000419540 1134 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 TXNP2-201ENST00000443918 295 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL157884.3-201ENST00000448273 1184 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 MEMO1P4-201ENST00000453590 386 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC069277.2-201ENST00000454211 432 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL035090.1-201ENST00000454835 332 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 RPS29P22-201ENST00000472363 168 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC079080.1-201ENST00000479841 822 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 OR4V1P-201ENST00000525394 1140 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CR383656.6-201ENST00000550518 394 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 PCNPP1-201ENST00000552501 511 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC084759.1-201ENST00000561168 290 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CD24P2-201ENST00000565486 219 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 SNX6P1-201ENST00000601728 1224 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC095055.1-201ENST00000603472 1113 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL133406.3-201ENST00000606817 541 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC100814.1-201ENST00000606963 623 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AC100827.5-201ENST00000615883 426 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AL121768.1-201ENST00000613917 2544 ntBASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
PCDHGA1Q9Y5H4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms