Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 AC079097.1-201ENST00000512187 1399 ntBASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC9.9□□□□□ -0.82
SHROOM4Q9ULL8 AC004076.2-201ENST00000620532 3323 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 GLULP6-201ENST00000399502 913 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 BX119904.3-201ENST00000428194 957 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 RPL7P11-201ENST00000437586 658 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 HMGB3P14-201ENST00000494195 599 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 AC140172.1-201ENST00000502928 141 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 RN7SKP260-201ENST00000516907 149 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 PARP1P2-201ENST00000556806 195 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 AC135068.12-201ENST00000637370 931 ntBASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC9.9□□□□□ -0.83
SHROOM4Q9ULL8 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AC120036.2-201ENST00000509729 1474 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 MIR1182-201ENST00000408363 97 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 CASKP1-201ENST00000412870 582 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AL354868.1-201ENST00000417077 482 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AC004690.1-201ENST00000418216 328 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 ATP6V0E1P2-201ENST00000441771 245 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 DEFB109A-201ENST00000482450 265 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AC022784.5-201ENST00000522241 437 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AC009027.1-201ENST00000604510 479 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AP005131.7-201ENST00000610087 611 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 AL034408.1-201ENST00000637712 664 ntBASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SHROOM4Q9ULL8 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 YES1-203ENST00000577961 4554 ntTSL 5 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 RNA5SP428-201ENST00000365129 132 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 RNA5SP455-201ENST00000365190 119 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 HSPA8P15-201ENST00000401676 786 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 GJA6P-201ENST00000415117 1042 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC079168.1-201ENST00000458741 345 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC025857.1-201ENST00000525252 377 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC025423.2-201ENST00000537570 439 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC008814.1-201ENST00000603797 406 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC096586.2-201ENST00000610260 441 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 AC015712.7-201ENST00000615211 635 ntBASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
SHROOM4Q9ULL8 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AL078595.2-201ENST00000605309 1780 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC073365.1-203ENST00000641055 1992 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC068287.1-201ENST00000430283 295 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC239367.2-201ENST00000447309 705 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 ARL6IP1P3-201ENST00000524544 560 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AP001267.4-201ENST00000602598 545 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AL512782.1-201ENST00000603093 364 ntBASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC9.87□□□□□ -0.83
SHROOM4Q9ULL8 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC9.86□□□□□ -0.83
SHROOM4Q9ULL8 AC004975.1-201ENST00000428733 208 ntBASIC9.86□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms