Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 ALB-219ENST00000621085 1418 ntTSL 5 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 OFD1P5Y-201ENST00000447585 2590 ntBASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC7.49□□□□□ -1.21
TRAIPQ9BWF2 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 MTND4P34-201ENST00000572715 1371 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 BRAFP1-201ENST00000445336 2703 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 RN7SKP47-201ENST00000365347 328 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 MTCO3P31-201ENST00000405526 789 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 HSFY4P-201ENST00000415994 1181 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 FANCD2P2-201ENST00000437591 1400 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 RPS18P1-201ENST00000447840 458 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 NPM1P39-201ENST00000449818 867 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC099340.1-201ENST00000475247 599 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC098818.1-201ENST00000478593 252 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC013828.1-201ENST00000481845 158 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 TBCA-206ENST00000518338 551 ntTSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC106038.2-201ENST00000520706 568 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 LINC02392-202ENST00000549313 574 ntTSL 4 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC023310.2-201ENST00000553844 547 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC244034.2-201ENST00000562504 509 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ULK4P1-202ENST00000565174 503 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC073429.2-201ENST00000569694 1444 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC103987.3-201ENST00000582071 292 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC008687.2-201ENST00000597865 520 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC064872.1-201ENST00000604823 1072 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AL031651.1-201ENST00000615357 1438 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ATM-229ENST00000639953 587 ntTSL 5 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC020658.2-201ENST00000559030 4020 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ST7-203ENST00000393443 2360 ntTSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC009229.4-201ENST00000623854 1947 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ALS2CR12-207ENST00000439709 1626 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 UGT2B27P-201ENST00000505092 1620 ntBASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
TRAIPQ9BWF2 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 RNU6-249P-201ENST00000363016 102 ntBASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 UBBP1-201ENST00000392399 473 ntBASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
TRAIPQ9BWF2 ATP5F1P4-201ENST00000397288 746 ntBASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms