Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC090527.3-201ENST00000619041 548 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC008115.4-201ENST00000619780 775 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC004808.2-201ENST00000627965 773 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
VPS35Q96QK1 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC112255.1-201ENST00000624070 2493 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AL034549.2-201ENST00000618285 3373 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 AC003973.3-201ENST00000624863 2822 ntBASIC5.29□□□□□ -1.56
VPS35Q96QK1 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC083843.2-201ENST00000568248 6253 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 HSPA8P15-201ENST00000401676 786 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC096644.3-201ENST00000416788 338 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AL606490.1-201ENST00000452266 765 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 HMGN1P9-201ENST00000515212 298 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 CDC42P3-201ENST00000518493 633 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 OR10D4P-201ENST00000525892 951 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 HNRNPRP2-201ENST00000528421 743 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC069307.1-201ENST00000602820 447 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 AP000894.4-201ENST00000610185 483 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 AL162574.1-201ENST00000615702 950 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 AC099654.6-201ENST00000636487 512 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AL138820.1-201ENST00000617901 5305 ntBASIC5.28□□□□□ -1.56
VPS35Q96QK1 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS35Q96QK1 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
VPS35Q96QK1 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 CDC27P2-201ENST00000425026 1922 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 RNU1-19P-201ENST00000363306 165 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 RNU1-146P-201ENST00000364015 165 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 AP000534.2-201ENST00000412729 568 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 AC112198.2-201ENST00000426589 6996 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 MTND4LP12-201ENST00000448237 295 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 DNAJB5P1-201ENST00000454004 806 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 CBX1P5-201ENST00000475330 559 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 UBA52P7-201ENST00000486088 380 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 RPSAP51-201ENST00000497462 645 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 IGBP1P4-201ENST00000503202 879 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 RNA5SP373-201ENST00000517271 95 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 AC025857.1-201ENST00000525252 377 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 AC092944.2-201ENST00000605443 889 ntBASIC5.27□□□□□ -1.57
VPS35Q96QK1 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
VPS35Q96QK1 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS35Q96QK1 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms