Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC079298.1-201ENST00000625026 1619 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 MIR375-201ENST00000362103 64 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AL034403.1-201ENST00000399414 885 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RNA5SP178-201ENST00000410380 128 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RN7SKP229-201ENST00000410465 302 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RN7SKP206-201ENST00000410823 293 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RMRPP5-201ENST00000411156 267 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 OR10T1P-201ENST00000424327 947 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RPL7P55-201ENST00000450522 746 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RPL12P39-201ENST00000455456 496 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 RN7SL273P-201ENST00000481561 299 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 MTCO3P27-201ENST00000514397 196 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 SCARNA6.1-201ENST00000516989 238 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 SNORA43.3-201ENST00000517240 103 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC139365.2-201ENST00000517972 253 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC011445.2-201ENST00000599274 173 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AF230666.2-201ENST00000602328 725 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC026741.1-201ENST00000605892 482 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC026979.4-201ENST00000606555 645 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC090772.4-201ENST00000623599 362 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC087565.3-203ENST00000641018 837 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.81□□□□□ -1.32
CHMP4CQ96CF2 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 EEF1A1P29-201ENST00000416082 1096 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AL354868.1-201ENST00000417077 482 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 PTP4A1P1-201ENST00000420539 515 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AL645931.1-201ENST00000439737 410 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AL157827.1-201ENST00000447622 132 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 OR7E116P-201ENST00000448529 957 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 RPS23P2-201ENST00000463671 415 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 RNU6-415P-201ENST00000516252 97 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC068620.3-201ENST00000602749 560 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC079880.2-201ENST00000603790 1213 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 AC015712.7-201ENST00000615211 635 ntBASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
CHMP4CQ96CF2 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 AL022322.2-201ENST00000624072 20397 ntBASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 AC093849.1-201ENST00000563631 2209 ntBASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 RNA5SP91-201ENST00000390902 119 ntBASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 RN7SKP286-201ENST00000410894 299 ntBASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 BX119904.1-201ENST00000432026 348 ntBASIC6.79□□□□□ -1.32
CHMP4CQ96CF2 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms