Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NOP56P2-201ENST00000447491 769 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 snoU13.1-201ENST00000459157 104 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 OR52A4P-201ENST00000472867 958 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 GLUD1P3-202ENST00000508551 200 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AC233699.1-201ENST00000569955 1168 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AC007786.3-201ENST00000615154 596 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AC091932.2-201ENST00000623014 291 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 OR9G4-201ENST00000302957 984 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 RN7SKP106-201ENST00000410832 272 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC010733.1-201ENST00000451515 401 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC009643.1-201ENST00000532030 391 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AL139124.1-201ENST00000609123 421 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 RPS3AP23-201ENST00000401762 784 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AL137845.2-201ENST00000444292 988 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC006967.1-201ENST00000467608 589 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 RPS24P16-201ENST00000497294 392 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 RN7SKP122-201ENST00000515923 296 ntBASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC88AQ3V6T2 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
CCDC88AQ3V6T2 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 SAMMSON-226ENST00000642089 1582 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 OR8V1P-201ENST00000395193 873 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AC114755.2-201ENST00000413520 361 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AC099670.2-201ENST00000435130 321 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 RPS29P10-201ENST00000439197 166 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 CDC27P1-201ENST00000445384 715 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 RPL12P20-201ENST00000475538 479 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 RN7SL604P-201ENST00000492589 296 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 OR8G5-201ENST00000524943 1041 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 CYCSP29-201ENST00000533731 318 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 AC010928.1-201ENST00000592477 1447 ntBASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
CCDC88AQ3V6T2 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AL731532.1-201ENST00000623972 4236 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 RNA5SP191-201ENST00000362585 102 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 NPM1P33-201ENST00000438918 872 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 AC079168.1-201ENST00000458741 345 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
CCDC88AQ3V6T2 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms