Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC6.31□□□□□ -1.4
RNF4P78317 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RNF4P78317 OR52D1-201ENST00000322641 1065 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RNF4P78317 OR4G2P-201ENST00000328113 903 ntBASIC6.31□□□□□ -1.4
RNF4P78317 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RNF4P78317 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RNF4P78317 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
RNF4P78317 RNA5SP474-201ENST00000391234 90 ntBASIC6.31□□□□□ -1.4
RNF4P78317 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.31□□□□□ -1.4
RNF4P78317 CYCSP45-201ENST00000402289 315 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 RPS3AP24-201ENST00000407896 734 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 PTPN2P1-201ENST00000423212 1072 ntBASIC6.31□□□□□ -1.4
RNF4P78317 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.31□□□□□ -1.4
RNF4P78317 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6.31□□□□□ -1.4
RNF4P78317 MTND1P2-201ENST00000430604 821 ntBASIC6.31□□□□□ -1.4
RNF4P78317 RPS10P21-201ENST00000430654 475 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AL590128.1-201ENST00000433407 286 ntBASIC6.31□□□□□ -1.4
RNF4P78317 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 AL121601.2-201ENST00000438019 707 ntBASIC6.31□□□□□ -1.4
RNF4P78317 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 HMGN1P32-201ENST00000441744 256 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 AL592447.1-201ENST00000447592 540 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC104306.1-201ENST00000449702 371 ntBASIC6.31□□□□□ -1.4
RNF4P78317 PPIAP32-201ENST00000449940 472 ntBASIC6.31□□□□□ -1.4
RNF4P78317 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.31□□□□□ -1.4
RNF4P78317 RNA5SP269-201ENST00000459032 137 ntBASIC6.31□□□□□ -1.4
RNF4P78317 RPSAP24-201ENST00000461543 873 ntBASIC6.31□□□□□ -1.4
RNF4P78317 ACTG1P13-201ENST00000486987 1043 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 AC122718.2-201ENST00000505325 591 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 RNU6-718P-201ENST00000516166 105 ntBASIC6.31□□□□□ -1.4
RNF4P78317 IGLVVII-41-1-201ENST00000518405 151 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.31□□□□□ -1.4
RNF4P78317 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC6.31□□□□□ -1.4
RNF4P78317 MED28P5-201ENST00000528254 438 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC140063.1-201ENST00000541343 259 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 OR5BK1P-201ENST00000550421 823 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 HMGN1P26-201ENST00000558737 303 ntBASIC6.31□□□□□ -1.4
RNF4P78317 GTF2IP8-201ENST00000560687 584 ntBASIC6.31□□□□□ -1.4
RNF4P78317 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.31□□□□□ -1.4
RNF4P78317 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 CTSLP2-201ENST00000580501 394 ntBASIC6.31□□□□□ -1.4
RNF4P78317 SLC25A36P1-201ENST00000590111 465 ntBASIC6.31□□□□□ -1.4
RNF4P78317 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 AC015871.2-201ENST00000603605 948 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AL589743.7-201ENST00000612637 233 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AL357080.1-201ENST00000617394 239 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AC138932.5-201ENST00000617759 563 ntBASIC6.31□□□□□ -1.4
RNF4P78317 SNORA16A-202ENST00000628458 135 ntBASIC6.31□□□□□ -1.4
RNF4P78317 CLUHP10-201ENST00000631979 980 ntBASIC6.31□□□□□ -1.4
RNF4P78317 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
RNF4P78317 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.31□□□□□ -1.4
RNF4P78317 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC6.31□□□□□ -1.4
RNF4P78317 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
RNF4P78317 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 AP000866.6-201ENST00000638898 3579 ntBASIC6.31□□□□□ -1.4
RNF4P78317 AL359091.1-201ENST00000449048 1734 ntBASIC6.3□□□□□ -1.4
RNF4P78317 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.3□□□□□ -1.4
RNF4P78317 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 AL391261.1-201ENST00000555712 1479 ntBASIC6.3□□□□□ -1.4
RNF4P78317 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
RNF4P78317 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
RNF4P78317 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms