Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.78□□□□□ -1.48
HDAC4P56524 AC112206.4-201ENST00000515142 405 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.78□□□□□ -1.48
HDAC4P56524 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5.78□□□□□ -1.48
HDAC4P56524 H3F3BP2-201ENST00000583907 357 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.78□□□□□ -1.48
HDAC4P56524 AC008536.1-201ENST00000602872 669 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 HMGB1P51-201ENST00000605166 638 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 AL158211.2-201ENST00000607282 395 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.78□□□□□ -1.48
HDAC4P56524 RNA5SP440-201ENST00000612665 119 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 AC008115.3-201ENST00000614874 549 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 AC127024.6-201ENST00000621598 424 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.78□□□□□ -1.48
HDAC4P56524 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDAC4P56524 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDAC4P56524 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HDAC4P56524 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.78□□□□□ -1.48
HDAC4P56524 GVINP1-202ENST00000531871 7271 ntBASIC5.78□□□□□ -1.48
HDAC4P56524 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
HDAC4P56524 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.78□□□□□ -1.48
HDAC4P56524 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.78□□□□□ -1.48
HDAC4P56524 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HDAC4P56524 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HDAC4P56524 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.77□□□□□ -1.49
HDAC4P56524 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HDAC4P56524 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HDAC4P56524 RNU6-1176P-201ENST00000390955 107 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 OR2AT2P-201ENST00000413438 905 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 OR6E1P-201ENST00000414424 923 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 MARK2P12-201ENST00000420129 585 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 RPL7P56-201ENST00000429441 717 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.77□□□□□ -1.49
HDAC4P56524 NPM1P18-201ENST00000434232 732 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 MTND2P40-201ENST00000436718 841 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC019185.1-201ENST00000442718 389 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 MTND2P25-201ENST00000449028 610 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 RPL31P15-201ENST00000449770 338 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 RBMY2TP-201ENST00000451162 947 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 LDHBP2-201ENST00000456969 1005 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 PPIAP19-201ENST00000486414 492 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC5.77□□□□□ -1.49
HDAC4P56524 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.77□□□□□ -1.49
HDAC4P56524 MTND3P24-201ENST00000506306 329 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 AC021106.1-201ENST00000509020 1058 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC109481.1-201ENST00000509173 282 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC074087.1-201ENST00000512059 724 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 TMEM97P2-201ENST00000517841 403 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 NRBF2P4-201ENST00000520874 850 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.77□□□□□ -1.49
HDAC4P56524 OR4A17P-201ENST00000526032 904 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.77□□□□□ -1.49
HDAC4P56524 AL049872.1-201ENST00000556323 322 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 SNORD39.2-201ENST00000579995 76 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 AC012213.4-201ENST00000606457 354 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 AL592494.3-201ENST00000609485 464 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AP000240.1-201ENST00000609910 452 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 AC015722.2-201ENST00000622210 551 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC5.77□□□□□ -1.49
HDAC4P56524 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 TTC39DP-201ENST00000416781 1688 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 AC068446.1-201ENST00000556425 1549 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDAC4P56524 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
HDAC4P56524 AC007938.2-201ENST00000604666 2634 ntBASIC5.77□□□□□ -1.49
HDAC4P56524 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDAC4P56524 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.76□□□□□ -1.49
HDAC4P56524 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDAC4P56524 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.76□□□□□ -1.49
HDAC4P56524 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDAC4P56524 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.76□□□□□ -1.49
HDAC4P56524 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDAC4P56524 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms