Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.7□□□□□ -1.5
PTPN9P43378 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.7□□□□□ -1.5
PTPN9P43378 AC233266.2-201ENST00000567067 528 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 AC006116.7-201ENST00000590141 756 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTPN9P43378 ZNF92P2-201ENST00000600543 1059 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 AC015849.2-201ENST00000605738 409 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.7□□□□□ -1.5
PTPN9P43378 AC010632.3-201ENST00000611377 369 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC5.7□□□□□ -1.5
PTPN9P43378 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.7□□□□□ -1.5
PTPN9P43378 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 AC097460.3-201ENST00000623099 442 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 AC135068.5-201ENST00000624197 983 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 AL691477.1-201ENST00000624398 162 ntBASIC5.7□□□□□ -1.5
PTPN9P43378 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTPN9P43378 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTPN9P43378 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTPN9P43378 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.7□□□□□ -1.5
PTPN9P43378 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTPN9P43378 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
PTPN9P43378 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
PTPN9P43378 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTPN9P43378 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
PTPN9P43378 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
PTPN9P43378 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
PTPN9P43378 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.69□□□□□ -1.5
PTPN9P43378 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 RNA5SP234-201ENST00000363916 119 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 SNORA70.6-201ENST00000383934 134 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 DBIP1-201ENST00000401435 260 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 MARK2P12-201ENST00000420129 585 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AL354766.1-201ENST00000423396 542 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC5.69□□□□□ -1.5
PTPN9P43378 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 MTND2P21-201ENST00000436242 1042 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 ELOCP3-201ENST00000439303 348 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AL157884.3-201ENST00000448273 1184 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AC092902.1-201ENST00000486999 259 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AC090638.1-201ENST00000498296 909 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AC109464.1-201ENST00000511091 819 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.69□□□□□ -1.5
PTPN9P43378 SCARNA20.4-201ENST00000516969 131 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.69□□□□□ -1.5
PTPN9P43378 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 AC106785.3-201ENST00000564064 847 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AC015911.5-201ENST00000587076 451 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.69□□□□□ -1.5
PTPN9P43378 AP000769.2-201ENST00000602344 396 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AL162574.1-201ENST00000615702 950 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AL645927.2-201ENST00000618350 349 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 RMST_5.1-201ENST00000618704 126 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AL133370.2-201ENST00000619934 439 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AP000943.4-201ENST00000622912 357 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 AC019080.5-201ENST00000624891 757 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
PTPN9P43378 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTPN9P43378 OR9K1P-202ENST00000641111 3217 ntBASIC5.69□□□□□ -1.5
PTPN9P43378 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
PTPN9P43378 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 RN7SKP124-201ENST00000364730 341 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 RN7SKP81-201ENST00000365603 331 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.68□□□□□ -1.5
PTPN9P43378 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC5.68□□□□□ -1.5
PTPN9P43378 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PTPN9P43378 GLUD1P9-201ENST00000420997 1173 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 PRUNEP1-201ENST00000425846 705 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 MORF4L1P7-201ENST00000426038 703 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 DSTNP5-201ENST00000427921 523 ntBASIC5.68□□□□□ -1.5
PTPN9P43378 RPS27AP6-201ENST00000427962 448 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms