Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
HOXC9P31274 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 AP000547.3-204ENST00000588548 2523 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
HOXC9P31274 AC126755.2-208ENST00000327792 462 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 AC138969.1-213ENST00000331436 462 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 ATP5HP3-201ENST00000396994 486 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 RPS4XP9-201ENST00000405151 780 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 AC138761.5-201ENST00000433967 325 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 RPS29P9-201ENST00000440360 171 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.73□□□□□ -1.33
HOXC9P31274 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.73□□□□□ -1.33
HOXC9P31274 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 AC111000.6-201ENST00000514471 709 ntBASIC6.73□□□□□ -1.33
HOXC9P31274 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.73□□□□□ -1.33
HOXC9P31274 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC6.73□□□□□ -1.33
HOXC9P31274 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.73□□□□□ -1.33
HOXC9P31274 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.73□□□□□ -1.33
HOXC9P31274 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC6.73□□□□□ -1.33
HOXC9P31274 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.73□□□□□ -1.33
HOXC9P31274 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.73□□□□□ -1.33
HOXC9P31274 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.73□□□□□ -1.33
HOXC9P31274 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC9P31274 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC9P31274 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
HOXC9P31274 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC9P31274 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC6.72□□□□□ -1.33
HOXC9P31274 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.72□□□□□ -1.33
HOXC9P31274 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.72□□□□□ -1.33
HOXC9P31274 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 CCL7-202ENST00000394627 696 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC9P31274 AL021331.1-201ENST00000402817 582 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 GTF2IP5-201ENST00000414608 731 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC6.72□□□□□ -1.33
HOXC9P31274 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.72□□□□□ -1.33
HOXC9P31274 AC009238.2-201ENST00000431026 355 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 AL356390.1-201ENST00000455684 397 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 RPL23AP72-201ENST00000492447 435 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC9P31274 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 RNA5SP392-201ENST00000516905 112 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 AC136777.2-201ENST00000522979 358 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.72□□□□□ -1.33
HOXC9P31274 AC020910.3-201ENST00000603701 874 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 AC002044.3-201ENST00000623314 541 ntBASIC6.72□□□□□ -1.33
HOXC9P31274 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC9P31274 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HOXC9P31274 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.72□□□□□ -1.33
HOXC9P31274 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
HOXC9P31274 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
HOXC9P31274 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC9P31274 RPS16P5-201ENST00000406501 404 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 RNU2-50P-201ENST00000410494 143 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 RAB28P1-201ENST00000411517 641 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 AC119751.6-201ENST00000416712 186 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.71□□□□□ -1.34
HOXC9P31274 YY1P1-201ENST00000427625 668 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 RPL19P16-201ENST00000433839 588 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 TPTE2P1-204ENST00000435256 593 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 NDUFA12P1-201ENST00000455914 406 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 RN7SL197P-201ENST00000466981 299 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC6.71□□□□□ -1.34
HOXC9P31274 IGKV1-32-201ENST00000519290 311 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC9P31274 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC6.71□□□□□ -1.34
HOXC9P31274 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
HOXC9P31274 AL512782.1-201ENST00000603093 364 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC6.71□□□□□ -1.34
HOXC9P31274 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.71□□□□□ -1.34
HOXC9P31274 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC9P31274 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.71□□□□□ -1.34
HOXC9P31274 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.71□□□□□ -1.34
HOXC9P31274 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
HOXC9P31274 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.71□□□□□ -1.34
HOXC9P31274 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
HOXC9P31274 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
HOXC9P31274 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 AC092070.2-203ENST00000598377 3644 ntBASIC6.7□□□□□ -1.34
HOXC9P31274 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
HOXC9P31274 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.7□□□□□ -1.34
HOXC9P31274 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
HOXC9P31274 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms